| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is mtnD [H]
Identifier: 33862470
GI number: 33862470
Start: 229093
End: 229650
Strand: Reverse
Name: mtnD [H]
Synonym: PMT0197
Alternate gene names: 33862470
Gene position: 229650-229093 (Counterclockwise)
Preceding gene: 33862473
Following gene: 33862466
Centisome position: 9.53
GC content: 56.09
Gene sequence:
>558_bases ATGAGTCGCCTCAGCATCCACCCCGAAGGCAGCACCAACGCCACAAGCCCGGCGGAACCCTTATTGGAGAGCGATGATCC TGCAGTGATCAAAGTCGAGCTGGCCAAAAGGGGCATTGCATTCCAGCGTTGGCCAGCCAAAGTCAAGCTCGATCAGAACT CAAGCGAGTCAGACATCCTTGCGGCCTACGCCGTCGAGATCGCCCGAGTGCAGGCAGATGGCCGTTACCCCACGGTGGAT GCAATCCGAATCACGCCAGACCACCCCGATCGTGAAGCGCTGCGCCAAAAATTCTTAGACGAACACACCCATGCCGAAGA CGAAGTTCGCTTCTTTGTTGAAGGGTGTGGGTTGTTCTGCTTACACATCGGCGCGGAAGTGCTGCAAGTCCTCTGCGAAC AAAACGACTGCATCAACGTGCCTGCCGGAACTCGCCATTGGTTCGATATGGGCAGCAAGCCACAGTTTTGTGCTGTGCGC TTCTTCGATAACCCAGAAGGCTGGATTGCAAACTTCACAGGGGATGCGATCGCCGAGAGATTCGCAAAGCTGCCATGA
Upstream 100 bases:
>100_bases GTTGAAACAGCAGGGCTCGACAAAGCCGAACGAAACATTCAGCCGTCGTTCTAAGACGCCACGATCAAGATGGCTGCAAA GACCCCTTCAACCTCTGGGA
Downstream 100 bases:
>100_bases GGCTGAAGTTGGCTTCAGCTATGCATGCGCGGCTGAGGATGCAAGTTGGCGAGGATCCCTGCCTCCACCTCTGCTAACTC CTGCAAACGAGCAATGATCA
Product: methionine salvage pathway protein E-2/E-2'
Products: NA
Alternate protein names: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD [H]
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MSRLSIHPEGSTNATSPAEPLLESDDPAVIKVELAKRGIAFQRWPAKVKLDQNSSESDILAAYAVEIARVQADGRYPTVD AIRITPDHPDREALRQKFLDEHTHAEDEVRFFVEGCGLFCLHIGAEVLQVLCEQNDCINVPAGTRHWFDMGSKPQFCAVR FFDNPEGWIANFTGDAIAERFAKLP
Sequences:
>Translated_185_residues MSRLSIHPEGSTNATSPAEPLLESDDPAVIKVELAKRGIAFQRWPAKVKLDQNSSESDILAAYAVEIARVQADGRYPTVD AIRITPDHPDREALRQKFLDEHTHAEDEVRFFVEGCGLFCLHIGAEVLQVLCEQNDCINVPAGTRHWFDMGSKPQFCAVR FFDNPEGWIANFTGDAIAERFAKLP >Mature_184_residues SRLSIHPEGSTNATSPAEPLLESDDPAVIKVELAKRGIAFQRWPAKVKLDQNSSESDILAAYAVEIARVQADGRYPTVDA IRITPDHPDREALRQKFLDEHTHAEDEVRFFVEGCGLFCLHIGAEVLQVLCEQNDCINVPAGTRHWFDMGSKPQFCAVRF FDNPEGWIANFTGDAIAERFAKLP
Specific function: Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- me
COG id: COG1791
COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acireductone dioxygenase (ARD) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004313 - InterPro: IPR011051 - InterPro: IPR014710 [H]
Pfam domain/function: PF03079 ARD [H]
EC number: =1.13.11.54; =1.13.11.53 [H]
Molecular weight: Translated: 20649; Mature: 20518
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLSIHPEGSTNATSPAEPLLESDDPAVIKVELAKRGIAFQRWPAKVKLDQNSSESDIL CCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEECCCCCCHHHH AAYAVEIARVQADGRYPTVDAIRITPDHPDREALRQKFLDEHTHAEDEVRFFVEGCGLFC HHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LHIGAEVLQVLCEQNDCINVPAGTRHWFDMGSKPQFCAVRFFDNPEGWIANFTGDAIAER HHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCEEEEEEEECCCCEEEECCHHHHHHH FAKLP HHCCC >Mature Secondary Structure SRLSIHPEGSTNATSPAEPLLESDDPAVIKVELAKRGIAFQRWPAKVKLDQNSSESDIL CCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEECCCCCCHHHH AAYAVEIARVQADGRYPTVDAIRITPDHPDREALRQKFLDEHTHAEDEVRFFVEGCGLFC HHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LHIGAEVLQVLCEQNDCINVPAGTRHWFDMGSKPQFCAVRFFDNPEGWIANFTGDAIAER HHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCEEEEEEEECCCCEEEECCHHHHHHH FAKLP HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA