| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862447
Identifier: 33862447
GI number: 33862447
Start: 196530
End: 197765
Strand: Reverse
Name: 33862447
Synonym: PMT0174
Alternate gene names: NA
Gene position: 197765-196530 (Counterclockwise)
Preceding gene: 33862448
Following gene: 33862446
Centisome position: 8.2
GC content: 55.1
Gene sequence:
>1236_bases GTGAGTCCATTCCCCTGTTTGCGAGCCCATCAACGCAACATCTTTCTGACAGCCTCTGGCATCAGTACTGCAGGCTCGTT CGCTGGAATGACTGCAAAAGGCTGGATCCTCATGGACGGCACCAACAGTCCAATGTTGCTTGCCGCCCACTTCGCCGCCC TTTCCCTGCCAACTCTGCTGGTCAGTGGAGCAGCAGGTACCTGCACAGACCGATTCGGCTGTGAACGGGTTCTAGTGCAA GCCCAGTGGGGCCTTTTAGCAGCTGCGTTACTGGGAGCACTGGCCATTCCTCTGATGACAGGAACCGCGCTCGTGACAAT GCTATTAACCAGCACGTTGCTTGTCGGGATCGCGAGTGCTTACGAACTCACTGCCCGCAATAAATACTGCGCCCTATTGA TAGACGAGCCCAATCAACTGGCCCCCTATCTCTCTAGTTTTGCGGTTGTGTTCAACGTAGGCAAACTCCTTGGGCCTCCC ATAGGAGGATGGTTACTGGTCATCACAGGACCTGCGGCTGCTCTCAGCATTGATGCCGCAAGTTACTTACTACCGATCGC CAGTCTCCTCTGGTTACTCGATCCAAACCGAAGCCAAGAACAACGCAGCGTTCCGGGTAAGCAATCAACAATGCTCTATG CATGGCACAACAGCAGCTCTTCGCTTCGACATGTGCTGGGCTTCACCGCAACACTCTGCTTGGTAGGTTTTTTCCACCCT GGTCTAGCCCCTCTAATCGCCGACCAGGTATTGGGTTCAGATCCAAGAGATCTTGGCGTGTTCACCAGCGTGCTTGCAGC AGGGAGCATTGCTGGGGGGGTGGTCCTACAACGCAATAGCCAACAATTCTGTAGACGCCCATTTCTCACGCTGAGTGGGT TCGCTCTCATCACTGCCATCGCCCAATTGGGAATGGCTCAAACTGAAAACACGCCACTAGCATTCAGCCTCACAATGACC CTGCTGATTGGAGCTGGTACTGCAGGCCTATTGAGCAGCTGCAACATGATCACCCAAGTGGGGTCCCCTCAGGTCTTGCG TGGGCGCATGGCAGGGCTAAGTCAAATCGCCTTCCTTGGGGGAGGAGGGCTAAGTGGCCTTCTTGCCGCTCAGATGGTGA TTTCAACGGGCATATCCACGACCTTCGCCACCGCAGGTGGAATCGGACTTGGCCTAGCCCTCTGGGGGTTCTGGCAAAAA GGCAGAACCGTACTAGAGGAGGTCAGATCAGCTTGA
Upstream 100 bases:
>100_bases GAACGATGGTTCCTGTCTTCATTACCGGCTCTGATGTCTATGACCTCACCGGCCAGCTGGTAGACACCAACGCCATGGCG GTCACAGCCCAGACGTCTCA
Downstream 100 bases:
>100_bases TGCCTTTAAGAACCTTGGTTAGTGCGAATGCCGCCACCAGGCCAACTGCGACGAACACCAAATAAAAAACGACGCCCATG TGCAACAAATCAGGTGAACA
Product: major facilitator superfamily multidrug-efflux transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Transporter; Facilitator Superfamily Multidrug-Efflux Transporter; Facilitator Superfamily Permease; Arabinose Efflux Permease; Macrolide-Efflux Protein; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNSPMLLAAHFAALSLPTLLVSGAAGTCTDRFGCERVLVQ AQWGLLAAALLGALAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPP IGGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSSSSLRHVLGFTATLCLVGFFHP GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQQFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMT LLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTGISTTFATAGGIGLGLALWGFWQK GRTVLEEVRSA
Sequences:
>Translated_411_residues MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNSPMLLAAHFAALSLPTLLVSGAAGTCTDRFGCERVLVQ AQWGLLAAALLGALAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPP IGGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSSSSLRHVLGFTATLCLVGFFHP GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQQFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMT LLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTGISTTFATAGGIGLGLALWGFWQK GRTVLEEVRSA >Mature_410_residues SPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNSPMLLAAHFAALSLPTLLVSGAAGTCTDRFGCERVLVQA QWGLLAAALLGALAIPLMTGTALVTMLLTSTLLVGIASAYELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPI GGWLLVITGPAAALSIDAASYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSSSSLRHVLGFTATLCLVGFFHPG LAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQQFCRRPFLTLSGFALITAIAQLGMAQTENTPLAFSLTMTL LIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLGGGGLSGLLAAQMVISTGISTTFATAGGIGLGLALWGFWQKG RTVLEEVRSA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42668; Mature: 42536
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNSPMLLAAHFAALSLPTLL CCCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH VSGAAGTCTDRFGCERVLVQAQWGLLAAALLGALAIPLMTGTALVTMLLTSTLLVGIASA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPIGGWLLVITGPAAALSIDAA HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHH SYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSSSSLRHVLGFTATLCLVGFFHP HHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQQFCRRPFLTLSGFALITAI CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH AQLGMAQTENTPLAFSLTMTLLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLG HHHCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEC GGGLSGLLAAQMVISTGISTTFATAGGIGLGLALWGFWQKGRTVLEEVRSA CCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SPFPCLRAHQRNIFLTASGISTAGSFAGMTAKGWILMDGTNSPMLLAAHFAALSLPTLL CCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH VSGAAGTCTDRFGCERVLVQAQWGLLAAALLGALAIPLMTGTALVTMLLTSTLLVGIASA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YELTARNKYCALLIDEPNQLAPYLSSFAVVFNVGKLLGPPIGGWLLVITGPAAALSIDAA HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHH SYLLPIASLLWLLDPNRSQEQRSVPGKQSTMLYAWHNSSSSLRHVLGFTATLCLVGFFHP HHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC GLAPLIADQVLGSDPRDLGVFTSVLAAGSIAGGVVLQRNSQQFCRRPFLTLSGFALITAI CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHH AQLGMAQTENTPLAFSLTMTLLIGAGTAGLLSSCNMITQVGSPQVLRGRMAGLSQIAFLG HHHCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEC GGGLSGLLAAQMVISTGISTTFATAGGIGLGLALWGFWQKGRTVLEEVRSA CCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA