| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862333
Identifier: 33862333
GI number: 33862333
Start: 60922
End: 61605
Strand: Reverse
Name: 33862333
Synonym: PMT0060
Alternate gene names: NA
Gene position: 61605-60922 (Counterclockwise)
Preceding gene: 33862334
Following gene: 33862332
Centisome position: 2.56
GC content: 53.8
Gene sequence:
>684_bases GTGGCGACGGCTGACCACCTAAAGGTGCCCCGCCAGCACGGACTTTTTTTGCATCACGGAATTGATCTTGGAGATGGCAG CGTGGCCCACTATCTAGAAGGTCGGTCAATCCTGCGCAGCTCCCTTGAAGACTTCTCGCGCGGTGCACCTGTGAACGTGG TGAATCACACCGAGGCCTCTCCCTCAGGAGTGACCCTGAGACGAGCGATGAGGCGCATTGGTGAGCAGCGCTACAACCTA CTTTTCAATAATTGTGAGCACTTTGCTAACTGGTGCAAAACCGGGCGACATCGAAGCAGCCAAGTCGAGGACTGGATGCA AACCAGCAGCCTAGGAGCCCTGGCACTGGGGCAAATCATCCCTGCTGCCCTACTGACAGGATTATCACTACTCCTTCGGC GAGGATTGGTGGATGAAACCTCGCGGGAACGTGCAAGGCAAGCAGTAGCTCAACTGAAAAGTCTGCGCGTGAACTTACTC AACAAGCTTGAAGCAACACTGGAGCAAGCAGAGGGATGGCTTCATGGTGAACCAGACAACAACAACTTGATCGATCACCG CAACTCCCGCAGCCGTTCTTTGCTGTTAAAAGGTCAGACCCTTGCCGATGAACTAGCAGCAATAGAAGATCTAGAAGCCC GCATCACTGCATTGCTCGACGAACCAAAAGCCAAGCCTGAGTAA
Upstream 100 bases:
>100_bases TTCACCGTGACCCGCACGATGGTTGATGAACATACCGGCGGCAAGGTGCTGCCTCTACCAGCCAACGACGAGCGATCGCA TCAGGAATCAGCCTGATCCA
Downstream 100 bases:
>100_bases CCTCAACATCCCGCCAGCAGCGCATGAGCCAGGCCTACCAGCCGCTGCATCACAAATATCGGCCACAGCGCTTCGATGCC CTGGTAGGGCAGGACGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MATADHLKVPRQHGLFLHHGIDLGDGSVAHYLEGRSILRSSLEDFSRGAPVNVVNHTEASPSGVTLRRAMRRIGEQRYNL LFNNCEHFANWCKTGRHRSSQVEDWMQTSSLGALALGQIIPAALLTGLSLLLRRGLVDETSRERARQAVAQLKSLRVNLL NKLEATLEQAEGWLHGEPDNNNLIDHRNSRSRSLLLKGQTLADELAAIEDLEARITALLDEPKAKPE
Sequences:
>Translated_227_residues MATADHLKVPRQHGLFLHHGIDLGDGSVAHYLEGRSILRSSLEDFSRGAPVNVVNHTEASPSGVTLRRAMRRIGEQRYNL LFNNCEHFANWCKTGRHRSSQVEDWMQTSSLGALALGQIIPAALLTGLSLLLRRGLVDETSRERARQAVAQLKSLRVNLL NKLEATLEQAEGWLHGEPDNNNLIDHRNSRSRSLLLKGQTLADELAAIEDLEARITALLDEPKAKPE >Mature_226_residues ATADHLKVPRQHGLFLHHGIDLGDGSVAHYLEGRSILRSSLEDFSRGAPVNVVNHTEASPSGVTLRRAMRRIGEQRYNLL FNNCEHFANWCKTGRHRSSQVEDWMQTSSLGALALGQIIPAALLTGLSLLLRRGLVDETSRERARQAVAQLKSLRVNLLN KLEATLEQAEGWLHGEPDNNNLIDHRNSRSRSLLLKGQTLADELAAIEDLEARITALLDEPKAKPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25242; Mature: 25111
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATADHLKVPRQHGLFLHHGIDLGDGSVAHYLEGRSILRSSLEDFSRGAPVNVVNHTEAS CCCCHHCCCCHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC PSGVTLRRAMRRIGEQRYNLLFNNCEHFANWCKTGRHRSSQVEDWMQTSSLGALALGQII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH PAALLTGLSLLLRRGLVDETSRERARQAVAQLKSLRVNLLNKLEATLEQAEGWLHGEPDN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NNLIDHRNSRSRSLLLKGQTLADELAAIEDLEARITALLDEPKAKPE CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ATADHLKVPRQHGLFLHHGIDLGDGSVAHYLEGRSILRSSLEDFSRGAPVNVVNHTEAS CCCHHCCCCHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC PSGVTLRRAMRRIGEQRYNLLFNNCEHFANWCKTGRHRSSQVEDWMQTSSLGALALGQII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH PAALLTGLSLLLRRGLVDETSRERARQAVAQLKSLRVNLLNKLEATLEQAEGWLHGEPDN HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NNLIDHRNSRSRSLLLKGQTLADELAAIEDLEARITALLDEPKAKPE CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA