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The map label for this gene is sodF

Identifier: 32267331

GI number: 32267331

Start: 1754121

End: 1754756

Strand: Direct

Name: sodF

Synonym: HH1832

Alternate gene names: 32267331

Gene position: 1754121-1754756 (Clockwise)

Preceding gene: 32267330

Following gene: 32267332

Centisome position: 97.5

GC content: 34.91

Gene sequence:

>636_bases
ATGTTTGAATTACGTAAATTACCTTATGGTAAAAATGAGTTTAATGGTTTTATTAGCGAACAGACTTTTGAATATCATTA
TGGCAAGCATCACCAAACCTATGTGAATAACTTGAATAATCTCATTAAAGGGACAGAGTTTGAAAACGCAGAGCTTGGCG
ATATTATCCTCAAATCAAGTGGTGGTATTTTTAATAATGCAGCTCAAGTGTATAATCACGACTTTTATTGGGATTGCTTA
AGCCCTAAAGAAAGTGCGCTAAGTGCGGAATTAAGTGCTGCTATTAATGCTGAATTTGGTTCATTAGATGTTTTCAAAGA
AAAATTCCTTGCTTCAAGCACAACTCTTTTTGGTTCAGGTTGGAATTGGCTCGTATATAATACACAAAGTAAAAAGCTTG
AAATTGTGCAAACAAGTAATGCAGCCACACCGGCTACGGATTCTAAAGTGCCGCTTTTGGTTGTTGATGTGTGGGAACAC
GCTTATTATATTGATCATAGAAATGCACGTCCTGCATATTTGGAAGCATTTTGGAAACATATTAATTGGGCATTTGTATC
AAGAGCTTATGAATGGGCGCTTAAAGAAGGCTTACAATCATTTAAATTCTACATTAATGGGATTCACAAAAAATAA

Upstream 100 bases:

>100_bases
TTCAGTTATAATATTTCCGCATTTGTCAGTGTTTAGATTTTTTAAACTTTTTAAAGAATCTAAAATTAGCAGGCAAACAA
CAAAATTAAGGAGAAAGTAA

Downstream 100 bases:

>100_bases
TTCCTTTAATACTTTTCAATATTCGCGCGGCTTTATAAGCCTTTGTGCGAATATTGCTTCAATTATGCTATTATCTTACT
CTTAATTATTTAAAAAAAGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFELRKLPYGKNEFNGFISEQTFEYHYGKHHQTYVNNLNNLIKGTEFENAELGDIILKSSGGIFNNAAQVYNHDFYWDCL
SPKESALSAELSAAINAEFGSLDVFKEKFLASSTTLFGSGWNWLVYNTQSKKLEIVQTSNAATPATDSKVPLLVVDVWEH
AYYIDHRNARPAYLEAFWKHINWAFVSRAYEWALKEGLQSFKFYINGIHKK

Sequences:

>Translated_211_residues
MFELRKLPYGKNEFNGFISEQTFEYHYGKHHQTYVNNLNNLIKGTEFENAELGDIILKSSGGIFNNAAQVYNHDFYWDCL
SPKESALSAELSAAINAEFGSLDVFKEKFLASSTTLFGSGWNWLVYNTQSKKLEIVQTSNAATPATDSKVPLLVVDVWEH
AYYIDHRNARPAYLEAFWKHINWAFVSRAYEWALKEGLQSFKFYINGIHKK
>Mature_211_residues
MFELRKLPYGKNEFNGFISEQTFEYHYGKHHQTYVNNLNNLIKGTEFENAELGDIILKSSGGIFNNAAQVYNHDFYWDCL
SPKESALSAELSAAINAEFGSLDVFKEKFLASSTTLFGSGWNWLVYNTQSKKLEIVQTSNAATPATDSKVPLLVVDVWEH
AYYIDHRNARPAYLEAFWKHINWAFVSRAYEWALKEGLQSFKFYINGIHKK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=193, Percent_Identity=39.3782383419689, Blast_Score=130, Evalue=7e-31,
Organism=Homo sapiens, GI67782305, Length=193, Percent_Identity=39.3782383419689, Blast_Score=130, Evalue=7e-31,
Organism=Homo sapiens, GI67782309, Length=188, Percent_Identity=35.1063829787234, Blast_Score=111, Evalue=5e-25,
Organism=Escherichia coli, GI1787946, Length=188, Percent_Identity=59.0425531914894, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1790342, Length=196, Percent_Identity=38.265306122449, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17506561, Length=191, Percent_Identity=38.7434554973822, Blast_Score=129, Evalue=8e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=189, Percent_Identity=34.3915343915344, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=192, Percent_Identity=34.375, Blast_Score=105, Evalue=4e-24,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=36.5482233502538, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24284; Mature: 24284

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELRKLPYGKNEFNGFISEQTFEYHYGKHHQTYVNNLNNLIKGTEFENAELGDIILKSS
CCCCCCCCCCCCHHCCCCCCCEEEHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
GGIFNNAAQVYNHDFYWDCLSPKESALSAELSAAINAEFGSLDVFKEKFLASSTTLFGSG
CCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECC
WNWLVYNTQSKKLEIVQTSNAATPATDSKVPLLVVDVWEHAYYIDHRNARPAYLEAFWKH
CEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
INWAFVSRAYEWALKEGLQSFKFYINGIHKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFELRKLPYGKNEFNGFISEQTFEYHYGKHHQTYVNNLNNLIKGTEFENAELGDIILKSS
CCCCCCCCCCCCHHCCCCCCCEEEHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
GGIFNNAAQVYNHDFYWDCLSPKESALSAELSAAINAEFGSLDVFKEKFLASSTTLFGSG
CCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECC
WNWLVYNTQSKKLEIVQTSNAATPATDSKVPLLVVDVWEHAYYIDHRNARPAYLEAFWKH
CEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
INWAFVSRAYEWALKEGLQSFKFYINGIHKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]