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The map label for this gene is pepF

Identifier: 32267309

GI number: 32267309

Start: 1732655

End: 1734511

Strand: Direct

Name: pepF

Synonym: HH1810

Alternate gene names: 32267309

Gene position: 1732655-1734511 (Clockwise)

Preceding gene: 32267308

Following gene: 32267310

Centisome position: 96.3

GC content: 35.16

Gene sequence:

>1857_bases
ATGAATTTAGAGCAAAATAAATTAAAAACACAAAGGAGCAGTATGAGAGGCATTATAGAATCTAGTCAATGGGATTTAAC
TGCACTTTTTAAGACAAAAGAGCAACTTGAGCGATTTATGTCAAGCCATTTGCGCCGTGCTAAAAAGTTTGCCAAAAGCT
ATGAAGGGCAACTTAAAAATATTAAACCAAATGAATTTGCTGATGTGATAAAAGAGTATGAACAGATTCTTGAAGGTTTT
GGACGCATAATGACCTATGTTTTTTTGTGTTTTGCAAAAGATACTACACAAGGGGATTTGTATGCTAAATATGAAATGCA
AACTACACAAATACAGAATCTTGTGCTCTTTTTTGAGATTGAATTTTGTAAGCTTCCTGAGACGCATAGGAAAGAGGTTA
TACAACATACACCACAATATGCGTATTTTTTGGAAAAGATTATCGAACAAGATACTTATCAACTTTCTTTGGCAGAGGAA
AAAGTGCTTTTAGCAACTTCACCCGTTGGTGTAGGAGCATTCTCAAGGCTTTTTGATGAGCATTTAGCACAATTTCGTTT
TGAGCCACTTAAGAAAGAAAATAAAAAATCAAATAAGGGTAAAAAGTCTCATAAATTGAGTGAGGAGGAAATTTTGAGTT
TGCTTCATCATTCAAAACGCAGTGTGCGTAAATATGCTCAAAAGGTTTTTAGTAAAAAACTCAAAAAATCCCGTCATCTT
TTGAGTTATGTTCTTAATATGGTGCGAAAAGACCTTAGTATTACAACAGCATTGCGTGGCTATAAACTTCCTGAATCTTT
CCGTCATATTAATAATGGTGCAACACAAAAAAGCGTAGATAAACTCATTGATATTGTAAGTGCGCATTATGGTATTGTGG
CTGATTATTATCGTGTTAAAGCTTCTTTACTTGGTATAAATGAGCTGCAAGATTATGATCGTTACGCGCCTCTTGACACT
CATACATACGAAATATCCTATAACGAAGCCATCAAACTTGTTTTGAAAGCATTTGAGAATTTTAGCAAGGAATTCAAAGA
TATTGCTTTAAAAGCATTAAAAAAAGGGTGGGTAGATTCTCACCCTACACCTAACAAACGTGGTGGAGCTTTTAGCCACG
GAAGTGTGCCTAGTGCGCACCCTTATGTGTTGCTTAATTATACAAACTCACGCCGTGATGCTTTTACGATTGCGCACGAA
TTTGGACATATGATACATCAGGAGCTTTCTAAAACGCAGGGCTATCTCAATATGGATACACCGCTTACAACAGCAGAGAC
TGCATCTGTTTTTGCTGAAATGTTACTTTTTGATATGCTTAAAACAACATTGGATAAACAAGAGCTTATAAGCTTATATG
CAGGAAAACTAGAAGATATTTTTTCTACGCTTTTTCGTCAAATTGTAATGACACACTTTGAGCGTAGAATCCACGCTCAA
AGTGAAGAGCTTAAGCCTGAAGCATTTGATAAAATATGGCGCGAAGAAAATGAACGTATGTTTGGAGATAGCCTAAAATT
AACTAAGAATTATGATGGCTGGTGGTGTTATATCCCGCATTTTGTGCACTCACCTTTTTATTGTTATGCTTATAGTTATG
GGCAATTACTTGTGTTAGCGCTTTTTGGTTTGTATAAATCTCAAAAAACACCTCGTATGAGAGCAAAATTTATCCAAAAA
TATACAGATTTTCTTTCACTTGGCGGAAGTAAAAGCCCTAAAGATTTGATTGCTTCATTTGGTTTTAACCTTGAGAGTGA
TAAATTTTGGCTTATAGGTATGGCTGAAGTGCAAAAAATGCTTGAGGAGTTTAAGGAGTTGGTCAATGCACAAAATTCTC
TTTCATCCACATTTTAA

Upstream 100 bases:

>100_bases
TTTAATACAAAAACTCTCACACTTAAAAATATGACTTCAGGTGTGCAAATAGATAGCATAAGCTTTCTTAAAGCTCTTGC
ACTTATTCAGGAGGAGTAAA

Downstream 100 bases:

>100_bases
GTTAATTGTAGATACTTACGCTAAAGATACTTTAATGTTTCTTGTTCAAGAGGGGATAAATTTTAATCTTTTATGTGATA
TAAAGCGCACAAATTTTTCT

Product: oligoendopeptidase PepF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MNLEQNKLKTQRSSMRGIIESSQWDLTALFKTKEQLERFMSSHLRRAKKFAKSYEGQLKNIKPNEFADVIKEYEQILEGF
GRIMTYVFLCFAKDTTQGDLYAKYEMQTTQIQNLVLFFEIEFCKLPETHRKEVIQHTPQYAYFLEKIIEQDTYQLSLAEE
KVLLATSPVGVGAFSRLFDEHLAQFRFEPLKKENKKSNKGKKSHKLSEEEILSLLHHSKRSVRKYAQKVFSKKLKKSRHL
LSYVLNMVRKDLSITTALRGYKLPESFRHINNGATQKSVDKLIDIVSAHYGIVADYYRVKASLLGINELQDYDRYAPLDT
HTYEISYNEAIKLVLKAFENFSKEFKDIALKALKKGWVDSHPTPNKRGGAFSHGSVPSAHPYVLLNYTNSRRDAFTIAHE
FGHMIHQELSKTQGYLNMDTPLTTAETASVFAEMLLFDMLKTTLDKQELISLYAGKLEDIFSTLFRQIVMTHFERRIHAQ
SEELKPEAFDKIWREENERMFGDSLKLTKNYDGWWCYIPHFVHSPFYCYAYSYGQLLVLALFGLYKSQKTPRMRAKFIQK
YTDFLSLGGSKSPKDLIASFGFNLESDKFWLIGMAEVQKMLEEFKELVNAQNSLSSTF

Sequences:

>Translated_618_residues
MNLEQNKLKTQRSSMRGIIESSQWDLTALFKTKEQLERFMSSHLRRAKKFAKSYEGQLKNIKPNEFADVIKEYEQILEGF
GRIMTYVFLCFAKDTTQGDLYAKYEMQTTQIQNLVLFFEIEFCKLPETHRKEVIQHTPQYAYFLEKIIEQDTYQLSLAEE
KVLLATSPVGVGAFSRLFDEHLAQFRFEPLKKENKKSNKGKKSHKLSEEEILSLLHHSKRSVRKYAQKVFSKKLKKSRHL
LSYVLNMVRKDLSITTALRGYKLPESFRHINNGATQKSVDKLIDIVSAHYGIVADYYRVKASLLGINELQDYDRYAPLDT
HTYEISYNEAIKLVLKAFENFSKEFKDIALKALKKGWVDSHPTPNKRGGAFSHGSVPSAHPYVLLNYTNSRRDAFTIAHE
FGHMIHQELSKTQGYLNMDTPLTTAETASVFAEMLLFDMLKTTLDKQELISLYAGKLEDIFSTLFRQIVMTHFERRIHAQ
SEELKPEAFDKIWREENERMFGDSLKLTKNYDGWWCYIPHFVHSPFYCYAYSYGQLLVLALFGLYKSQKTPRMRAKFIQK
YTDFLSLGGSKSPKDLIASFGFNLESDKFWLIGMAEVQKMLEEFKELVNAQNSLSSTF
>Mature_618_residues
MNLEQNKLKTQRSSMRGIIESSQWDLTALFKTKEQLERFMSSHLRRAKKFAKSYEGQLKNIKPNEFADVIKEYEQILEGF
GRIMTYVFLCFAKDTTQGDLYAKYEMQTTQIQNLVLFFEIEFCKLPETHRKEVIQHTPQYAYFLEKIIEQDTYQLSLAEE
KVLLATSPVGVGAFSRLFDEHLAQFRFEPLKKENKKSNKGKKSHKLSEEEILSLLHHSKRSVRKYAQKVFSKKLKKSRHL
LSYVLNMVRKDLSITTALRGYKLPESFRHINNGATQKSVDKLIDIVSAHYGIVADYYRVKASLLGINELQDYDRYAPLDT
HTYEISYNEAIKLVLKAFENFSKEFKDIALKALKKGWVDSHPTPNKRGGAFSHGSVPSAHPYVLLNYTNSRRDAFTIAHE
FGHMIHQELSKTQGYLNMDTPLTTAETASVFAEMLLFDMLKTTLDKQELISLYAGKLEDIFSTLFRQIVMTHFERRIHAQ
SEELKPEAFDKIWREENERMFGDSLKLTKNYDGWWCYIPHFVHSPFYCYAYSYGQLLVLALFGLYKSQKTPRMRAKFIQK
YTDFLSLGGSKSPKDLIASFGFNLESDKFWLIGMAEVQKMLEEFKELVNAQNSLSSTF

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 71931; Mature: 71931

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEQNKLKTQRSSMRGIIESSQWDLTALFKTKEQLERFMSSHLRRAKKFAKSYEGQLKN
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IKPNEFADVIKEYEQILEGFGRIMTYVFLCFAKDTTQGDLYAKYEMQTTQIQNLVLFFEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEEEEEEE
EFCKLPETHRKEVIQHTPQYAYFLEKIIEQDTYQLSLAEEKVLLATSPVGVGAFSRLFDE
HHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHH
HLAQFRFEPLKKENKKSNKGKKSHKLSEEEILSLLHHSKRSVRKYAQKVFSKKLKKSRHL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYVLNMVRKDLSITTALRGYKLPESFRHINNGATQKSVDKLIDIVSAHYGIVADYYRVK
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLGINELQDYDRYAPLDTHTYEISYNEAIKLVLKAFENFSKEFKDIALKALKKGWVDS
HHHHCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HPTPNKRGGAFSHGSVPSAHPYVLLNYTNSRRDAFTIAHEFGHMIHQELSKTQGYLNMDT
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCC
PLTTAETASVFAEMLLFDMLKTTLDKQELISLYAGKLEDIFSTLFRQIVMTHFERRIHAQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEELKPEAFDKIWREENERMFGDSLKLTKNYDGWWCYIPHFVHSPFYCYAYSYGQLLVLA
HHHCCHHHHHHHHHHHCHHHCCCCEEEEECCCCEEEECCHHHCCCCEEEHHHHHHHHHHH
LFGLYKSQKTPRMRAKFIQKYTDFLSLGGSKSPKDLIASFGFNLESDKFWLIGMAEVQKM
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHH
LEEFKELVNAQNSLSSTF
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLEQNKLKTQRSSMRGIIESSQWDLTALFKTKEQLERFMSSHLRRAKKFAKSYEGQLKN
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IKPNEFADVIKEYEQILEGFGRIMTYVFLCFAKDTTQGDLYAKYEMQTTQIQNLVLFFEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEEEEEEE
EFCKLPETHRKEVIQHTPQYAYFLEKIIEQDTYQLSLAEEKVLLATSPVGVGAFSRLFDE
HHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHH
HLAQFRFEPLKKENKKSNKGKKSHKLSEEEILSLLHHSKRSVRKYAQKVFSKKLKKSRHL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYVLNMVRKDLSITTALRGYKLPESFRHINNGATQKSVDKLIDIVSAHYGIVADYYRVK
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLGINELQDYDRYAPLDTHTYEISYNEAIKLVLKAFENFSKEFKDIALKALKKGWVDS
HHHHCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HPTPNKRGGAFSHGSVPSAHPYVLLNYTNSRRDAFTIAHEFGHMIHQELSKTQGYLNMDT
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCC
PLTTAETASVFAEMLLFDMLKTTLDKQELISLYAGKLEDIFSTLFRQIVMTHFERRIHAQ
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEELKPEAFDKIWREENERMFGDSLKLTKNYDGWWCYIPHFVHSPFYCYAYSYGQLLVLA
HHHCCHHHHHHHHHHHCHHHCCCCEEEEECCCCEEEECCHHHCCCCEEEHHHHHHHHHHH
LFGLYKSQKTPRMRAKFIQKYTDFLSLGGSKSPKDLIASFGFNLESDKFWLIGMAEVQKM
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHH
LEEFKELVNAQNSLSSTF
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9209029 [H]