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The map label for this gene is oppC

Identifier: 32267284

GI number: 32267284

Start: 1707366

End: 1708433

Strand: Direct

Name: oppC

Synonym: HH1785

Alternate gene names: 32267284

Gene position: 1707366-1708433 (Clockwise)

Preceding gene: 32267283

Following gene: 32267285

Centisome position: 94.9

GC content: 35.77

Gene sequence:

>1068_bases
ATGTCTAATAGTATGCTCAAAACTCGTTGGTATGTCTTTAAGCAAAATAAACGCGCTTTTTATTCCCTTATATGTTTTGC
ACTCCTTTTTTTAATAAGCGTATTTGCAGAATTTATCGCTAATGACAAGCCACTTTTTATTTATAAAGATTCCAAAATGT
ATTTTCCTGTGTTTGTAAATTACCCCGAAACTACTTTTGGTGGGGATTTTGAGACTTGGAGTGATTATTTAGATAGCTAT
GTGAGAGATGAATTACTTAAAGATGCTTTTGTTGTTTATGCGCCTATTCCTTATAGCTATAATAGTATTGTTATGGATTT
ACCTACTCAAGCCCCGACATCTCCTGATTCTAAGCATTATCTAGGCACAGATGATAAAGCAAGAGATGTAGCTGCGAGGC
TTATTTATGGATATAGAATCTCTATTATTTTTGCCCTTATTTTAAGTATATGTAGTGTGATTATCGGTGTAAGCGTAGGA
GCATTGCAAGGATATTATGGAGGTAAAATTGATTTAATAGGGCAGCGGCTCATTGAGATTTTAAACGCTGTGCCTATTTT
GTTCGTGATTATTATCATTTCAAGTGTATTTGAGCCAAGTTTTATGTGGATTTTATGCGTGGTGTTGGCTTTTTCGTGGA
TGATACTTGTCAATCTTGTCAGGGCTGAATTTTTAAAAGCACGGAATCTTGAGTATGTGAGAGCTGCAAAAGCTATGGGT
GTGAGTGATATAAAAATTATGTTTGTCCATATTTTGCCCAATGCAATGAGTGCTACGCTTACTTTCACGCCTTTTATTAT
GGCTGGAAGTATCGTAACACTTAGTAGTCTTGATTTTTTGGGCTTTGGTATGCCTGTAGGAAGTGCGAGTTTAGGCGAGA
TTCTCGCACAAGGTAAAAACAATCTCTCTGCTCCACATTTAGGTATAAGTGCTTTTATAGCACTTTGCGTGTTGCTTTCA
ATCCTTGTTTTTATTGGTGAGGGTTTACGCGATGCACTTGACCCACATATAAAGCCAAGTATGCAATCTCATACGAATTT
AAAGGATAAAAATGATTTTAGAGATTAA

Upstream 100 bases:

>100_bases
GGCACTTTATATATTTTTACTTTTATTGCCCTTGTGATAGGTATTATAAGTGATGTGATGTATTATCTCATTGACCCACG
TATCCATTTTGGGAGCAAAA

Downstream 100 bases:

>100_bases
GAATCTTTATGCTTCATTTTTACACTCCTCGCATTTTAGTTTGAACAATGTCTCTTTGAGCATTGCTAAGAGTCAAAAAG
TTGCACTTGTAGGAGAATCT

Product: oligopeptide ABC transporter

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSNSMLKTRWYVFKQNKRAFYSLICFALLFLISVFAEFIANDKPLFIYKDSKMYFPVFVNYPETTFGGDFETWSDYLDSY
VRDELLKDAFVVYAPIPYSYNSIVMDLPTQAPTSPDSKHYLGTDDKARDVAARLIYGYRISIIFALILSICSVIIGVSVG
ALQGYYGGKIDLIGQRLIEILNAVPILFVIIIISSVFEPSFMWILCVVLAFSWMILVNLVRAEFLKARNLEYVRAAKAMG
VSDIKIMFVHILPNAMSATLTFTPFIMAGSIVTLSSLDFLGFGMPVGSASLGEILAQGKNNLSAPHLGISAFIALCVLLS
ILVFIGEGLRDALDPHIKPSMQSHTNLKDKNDFRD

Sequences:

>Translated_355_residues
MSNSMLKTRWYVFKQNKRAFYSLICFALLFLISVFAEFIANDKPLFIYKDSKMYFPVFVNYPETTFGGDFETWSDYLDSY
VRDELLKDAFVVYAPIPYSYNSIVMDLPTQAPTSPDSKHYLGTDDKARDVAARLIYGYRISIIFALILSICSVIIGVSVG
ALQGYYGGKIDLIGQRLIEILNAVPILFVIIIISSVFEPSFMWILCVVLAFSWMILVNLVRAEFLKARNLEYVRAAKAMG
VSDIKIMFVHILPNAMSATLTFTPFIMAGSIVTLSSLDFLGFGMPVGSASLGEILAQGKNNLSAPHLGISAFIALCVLLS
ILVFIGEGLRDALDPHIKPSMQSHTNLKDKNDFRD
>Mature_354_residues
SNSMLKTRWYVFKQNKRAFYSLICFALLFLISVFAEFIANDKPLFIYKDSKMYFPVFVNYPETTFGGDFETWSDYLDSYV
RDELLKDAFVVYAPIPYSYNSIVMDLPTQAPTSPDSKHYLGTDDKARDVAARLIYGYRISIIFALILSICSVIIGVSVGA
LQGYYGGKIDLIGQRLIEILNAVPILFVIIIISSVFEPSFMWILCVVLAFSWMILVNLVRAEFLKARNLEYVRAAKAMGV
SDIKIMFVHILPNAMSATLTFTPFIMAGSIVTLSSLDFLGFGMPVGSASLGEILAQGKNNLSAPHLGISAFIALCVLLSI
LVFIGEGLRDALDPHIKPSMQSHTNLKDKNDFRD

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4239

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788505, Length=330, Percent_Identity=52.4242424242424, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1787498, Length=250, Percent_Identity=34, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787054, Length=229, Percent_Identity=31.4410480349345, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1789964, Length=338, Percent_Identity=28.1065088757396, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787760, Length=249, Percent_Identity=28.1124497991968, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=23.3606557377049, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787549, Length=232, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39660; Mature: 39529

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSMLKTRWYVFKQNKRAFYSLICFALLFLISVFAEFIANDKPLFIYKDSKMYFPVFVN
CCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEE
YPETTFGGDFETWSDYLDSYVRDELLKDAFVVYAPIPYSYNSIVMDLPTQAPTSPDSKHY
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCC
LGTDDKARDVAARLIYGYRISIIFALILSICSVIIGVSVGALQGYYGGKIDLIGQRLIEI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LNAVPILFVIIIISSVFEPSFMWILCVVLAFSWMILVNLVRAEFLKARNLEYVRAAKAMG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
VSDIKIMFVHILPNAMSATLTFTPFIMAGSIVTLSSLDFLGFGMPVGSASLGEILAQGKN
CCHHHHHHEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
NLSAPHLGISAFIALCVLLSILVFIGEGLRDALDPHIKPSMQSHTNLKDKNDFRD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SNSMLKTRWYVFKQNKRAFYSLICFALLFLISVFAEFIANDKPLFIYKDSKMYFPVFVN
CCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEE
YPETTFGGDFETWSDYLDSYVRDELLKDAFVVYAPIPYSYNSIVMDLPTQAPTSPDSKHY
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCC
LGTDDKARDVAARLIYGYRISIIFALILSICSVIIGVSVGALQGYYGGKIDLIGQRLIEI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LNAVPILFVIIIISSVFEPSFMWILCVVLAFSWMILVNLVRAEFLKARNLEYVRAAKAMG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
VSDIKIMFVHILPNAMSATLTFTPFIMAGSIVTLSSLDFLGFGMPVGSASLGEILAQGKN
CCHHHHHHEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
NLSAPHLGISAFIALCVLLSILVFIGEGLRDALDPHIKPSMQSHTNLKDKNDFRD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]