| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is yhhF [C]
Identifier: 32267052
GI number: 32267052
Start: 1488866
End: 1489456
Strand: Direct
Name: yhhF [C]
Synonym: HH1553
Alternate gene names: 32267052
Gene position: 1488866-1489456 (Clockwise)
Preceding gene: 32267051
Following gene: 32267053
Centisome position: 82.75
GC content: 33.84
Gene sequence:
>591_bases ATGGGCGTTGTAAAATTTCATATTCAAGCAGGCATACTTAAACATCTCCCTTTAATATGGAATAATCAAGAAAGCACGCG CCCAACGAAATCTATTGTGCGAGAATCTTTTTTTAACACAATGAGCATAAATATTGTAGAGTGTGTATTTGTTGAAGCAT TTGGTGGTTGTGGTTCGATGGGAATTGAAGCACTTTCTCGCGGAGCAAGTGAAGCAATATTTTATGAGATAGACAAAAGA GCATATAATATTTTGTTGCAAAATCTTGCATTTGCACAAAAAAGAGCATCAGGGCTAAAATTTTATGCTTACAATACCGA TTTTTTTACACAAAGTTTTCAAAGATGGATTACTACAAAAGAAAATGTGATTTTATATTTTGACCCACCCTTTTGCATTA GGGAAGGTATGGGAGATATTTATGAACGTCTTTTGACAATGGTAGAAAATCTTGGACAATGTAGTGTGAATTTTATTGTT TTTGAACATTGGAGTGGGTATAATATGCCTTCCATTGTTGGGGAATATATACTGCTTAAGACTCGTCAATTTGGTAAAAG CAGCCTCACTTATTACACATTAAAGGATTAA
Upstream 100 bases:
>100_bases AAGTGCAAGAGAGCTTACACAAAAAATTATCGCTCTTTTGAAGCATACATAACATTTTAATAAATATTGAGCACATTAAC ATAGAACAAGCGATACAAAG
Downstream 100 bases:
>100_bases TTATGGCAGAAGAAGAAAAAGCAGCAGAAAGTGGCGGAGATAAAAAAAGCAAAGCAATTTTATTTGTTATTATTGGCATT GTGGTAGTGCTTCTTCTATT
Product: hypothetical protein
Products: NA
Alternate protein names: N6-Adenine-Specific Methylase; N-6 Adenine Methyltransferase; DNA Methylase; Methylase; RNA Methyltransferase RsmD Family; Site-Specific DNA Methyltransferase; Methylase YhhF
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MGVVKFHIQAGILKHLPLIWNNQESTRPTKSIVRESFFNTMSINIVECVFVEAFGGCGSMGIEALSRGASEAIFYEIDKR AYNILLQNLAFAQKRASGLKFYAYNTDFFTQSFQRWITTKENVILYFDPPFCIREGMGDIYERLLTMVENLGQCSVNFIV FEHWSGYNMPSIVGEYILLKTRQFGKSSLTYYTLKD
Sequences:
>Translated_196_residues MGVVKFHIQAGILKHLPLIWNNQESTRPTKSIVRESFFNTMSINIVECVFVEAFGGCGSMGIEALSRGASEAIFYEIDKR AYNILLQNLAFAQKRASGLKFYAYNTDFFTQSFQRWITTKENVILYFDPPFCIREGMGDIYERLLTMVENLGQCSVNFIV FEHWSGYNMPSIVGEYILLKTRQFGKSSLTYYTLKD >Mature_195_residues GVVKFHIQAGILKHLPLIWNNQESTRPTKSIVRESFFNTMSINIVECVFVEAFGGCGSMGIEALSRGASEAIFYEIDKRA YNILLQNLAFAQKRASGLKFYAYNTDFFTQSFQRWITTKENVILYFDPPFCIREGMGDIYERLLTMVENLGQCSVNFIVF EHWSGYNMPSIVGEYILLKTRQFGKSSLTYYTLKD
Specific function: Unknown
COG id: COG0742
COG function: function code L; N6-adenine-specific methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.- [C]
Molecular weight: Translated: 22547; Mature: 22416
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVVKFHIQAGILKHLPLIWNNQESTRPTKSIVRESFFNTMSINIVECVFVEAFGGCGSM CCEEEEEHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHH GIEALSRGASEAIFYEIDKRAYNILLQNLAFAQKRASGLKFYAYNTDFFTQSFQRWITTK HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC ENVILYFDPPFCIREGMGDIYERLLTMVENLGQCSVNFIVFEHWSGYNMPSIVGEYILLK CCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHH TRQFGKSSLTYYTLKD HHHCCCCCEEEEEECC >Mature Secondary Structure GVVKFHIQAGILKHLPLIWNNQESTRPTKSIVRESFFNTMSINIVECVFVEAFGGCGSM CEEEEEHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHH GIEALSRGASEAIFYEIDKRAYNILLQNLAFAQKRASGLKFYAYNTDFFTQSFQRWITTK HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC ENVILYFDPPFCIREGMGDIYERLLTMVENLGQCSVNFIVFEHWSGYNMPSIVGEYILLK CCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHH TRQFGKSSLTYYTLKD HHHCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]
General reaction: Transferring one-carbon groups [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA