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The map label for this gene is dnaQ

Identifier: 32266846

GI number: 32266846

Start: 1302588

End: 1303388

Strand: Direct

Name: dnaQ

Synonym: HH1347

Alternate gene names: 32266846

Gene position: 1302588-1303388 (Clockwise)

Preceding gene: 32266845

Following gene: 32266849

Centisome position: 72.4

GC content: 35.58

Gene sequence:

>801_bases
ATGACATATCAGCAGCTTTTTGAAAAACTCCGTCAAAAGCCTATGAGCGAGGCACAATTTTATACTTATGTAAAAAATAT
CGGCGGACTTTATGCAGATATAGCATCTGAACTTGAACTACTTAAGGGTTCCGGTGCTCCTTTGTATGTGCAAAAACACA
ATGGAGAATCATATTTTAGTCTAAGCACACAACACCAAGAATGGCAAAAAGGCAATTTAGTTTTTGTAGATATTGAAACT
AATGGGGCTAAACCTCAACAATGTCAAATTATTGAGATTGGTGCGCTTAAAGTAAAAGGTGGGGAGATTATAGATAAATT
TGAAAGCTATGTTTATGCTGATGAAGTGCCAGAGAATATTACGCAGCTTACAGGTATTTGCCAAGCAGATATTGCTTATG
CACCTTCAATTAAAGAAGTTTTAGGAGAATTTAGGGCATTTTTAGGCACAGATGTATTTGTGGCTCATAATGTAAATTTT
GATTATGGCTTTGTAGATTATCACTTACGTCAGTGTGGTTTGTTTGGGCTACTTAATCCTAAGCTTTGCACGATTGAGCT
TGCCAAAAAAACGATTCTTTCTCCTCGTTATGCTCTTGGGTTTTTAAATGAATTTTTAGGCATACGCACAGCAGTTACTC
ATCGCGCTTATGCTGATGCACTCACAAGCTTTAGAGTTTTTGAAATTGCTTCAATGATGTTTCCGCCTTTTGTTAAAAGT
ATGCAAGATTTGATTGATTTTTCAAAAGGGCGACTAAAGTTAGATTATACTACACCTTTTATATACCAAAATAAGCACTA
A

Upstream 100 bases:

>100_bases
ACATACTCAAAAATGCAGGAATTGATATAGTTGTAGCTGGGAGTTTTATTTTTGGCTCAACTGATTATGCTCAAGCTATT
AGCGCACTTAGATAGAATCT

Downstream 100 bases:

>100_bases
ATCCCCTGTCCCAGCCACTTAAATCTTTATAGAATGTTATATTTTTTGCACGAGATTGTAAAAGTATGTGTTCAAGTGCA
TCTTTTTGGTCATAGCCTAT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTYQQLFEKLRQKPMSEAQFYTYVKNIGGLYADIASELELLKGSGAPLYVQKHNGESYFSLSTQHQEWQKGNLVFVDIET
NGAKPQQCQIIEIGALKVKGGEIIDKFESYVYADEVPENITQLTGICQADIAYAPSIKEVLGEFRAFLGTDVFVAHNVNF
DYGFVDYHLRQCGLFGLLNPKLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEIASMMFPPFVKS
MQDLIDFSKGRLKLDYTTPFIYQNKH

Sequences:

>Translated_266_residues
MTYQQLFEKLRQKPMSEAQFYTYVKNIGGLYADIASELELLKGSGAPLYVQKHNGESYFSLSTQHQEWQKGNLVFVDIET
NGAKPQQCQIIEIGALKVKGGEIIDKFESYVYADEVPENITQLTGICQADIAYAPSIKEVLGEFRAFLGTDVFVAHNVNF
DYGFVDYHLRQCGLFGLLNPKLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEIASMMFPPFVKS
MQDLIDFSKGRLKLDYTTPFIYQNKH
>Mature_265_residues
TYQQLFEKLRQKPMSEAQFYTYVKNIGGLYADIASELELLKGSGAPLYVQKHNGESYFSLSTQHQEWQKGNLVFVDIETN
GAKPQQCQIIEIGALKVKGGEIIDKFESYVYADEVPENITQLTGICQADIAYAPSIKEVLGEFRAFLGTDVFVAHNVNFD
YGFVDYHLRQCGLFGLLNPKLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEIASMMFPPFVKSM
QDLIDFSKGRLKLDYTTPFIYQNKH

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP; PF01336 tRNA_anti [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 30196; Mature: 30065

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYQQLFEKLRQKPMSEAQFYTYVKNIGGLYADIASELELLKGSGAPLYVQKHNGESYFS
CCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEE
LSTQHQEWQKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDKFESYVYADEVPENI
ECCCHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHEEHHHHHHHH
TQLTGICQADIAYAPSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVDYHLRQCGLFGLLNP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCHHCCCCC
KLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEIASMMFPPFVKS
CEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MQDLIDFSKGRLKLDYTTPFIYQNKH
HHHHHHCCCCCEEEEECCCEEEECCC
>Mature Secondary Structure 
TYQQLFEKLRQKPMSEAQFYTYVKNIGGLYADIASELELLKGSGAPLYVQKHNGESYFS
CHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEE
LSTQHQEWQKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDKFESYVYADEVPENI
ECCCHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHEEHHHHHHHH
TQLTGICQADIAYAPSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVDYHLRQCGLFGLLNP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCHHCCCCC
KLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEIASMMFPPFVKS
CEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MQDLIDFSKGRLKLDYTTPFIYQNKH
HHHHHHCCCCCEEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]