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The map label for this gene is rpe

Identifier: 32266845

GI number: 32266845

Start: 1301932

End: 1302582

Strand: Direct

Name: rpe

Synonym: HH1346

Alternate gene names: 32266845

Gene position: 1301932-1302582 (Clockwise)

Preceding gene: 32266838

Following gene: 32266846

Centisome position: 72.36

GC content: 36.87

Gene sequence:

>651_bases
ATGAACAAAGATATATTAGTAGCCCCAAGTATGCTTTCTGCAGACTTTGCAAAATTAGGGCAAGAGGTGGAAGATATATG
TAAAGCAGGGTGTGATTTTGTGCATATTGATGTAATGGACGGACATTTTGTGCCAAATCTCACAATGGGTCCTATGATTG
TGCAAAGCATAGCCAAGAGTTCAAGCAAACCTTTAGATATTCATCTTATGGTAAAAAATGTTCCCTTTTTTGTGGATTTA
TTTTTGCCTTTAAAACCTGCATTTATGAGTGTGCATATTGAGGAAGTGCAACATTTGCATCGCCTCATTTGGTATATTAA
AGAATCCGGCGTAAAAGCAGGTGTAGTGCTTAATCCTCACACTAACGAGCAAAGCTTAGAGTATATTTTGCCTGATATTG
ATTTGGTATTGCTTATGAGTGTAAATCCGGGTTTTGGAGGGCAGAGTTTTATCCCCCATAGTGTCAAAAAATTACAGAAT
CTTAAAAAAATGCGTGATAGACTCAATCCTTCTTGTTTGCTTGAGATTGACGGAGGAGTGAGTGATAAAAATATTGACAT
ACTCAAAAATGCAGGAATTGATATAGTTGTAGCTGGGAGTTTTATTTTTGGCTCAACTGATTATGCTCAAGCTATTAGCG
CACTTAGATAG

Upstream 100 bases:

>100_bases
ATGAATAAAATAAGGGCATACAATCTCCTTAATAATCAGTGCAAGACTTACAGCGATATTATGCTAAAATATATGTAGGA
TTTTATCATAAGGATAAGTA

Downstream 100 bases:

>100_bases
AATCTATGACATATCAGCAGCTTTTTGAAAAACTCCGTCAAAAGCCTATGAGCGAGGCACAATTTTATACTTATGTAAAA
AATATCGGCGGACTTTATGC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNKDILVAPSMLSADFAKLGQEVEDICKAGCDFVHIDVMDGHFVPNLTMGPMIVQSIAKSSSKPLDIHLMVKNVPFFVDL
FLPLKPAFMSVHIEEVQHLHRLIWYIKESGVKAGVVLNPHTNEQSLEYILPDIDLVLLMSVNPGFGGQSFIPHSVKKLQN
LKKMRDRLNPSCLLEIDGGVSDKNIDILKNAGIDIVVAGSFIFGSTDYAQAISALR

Sequences:

>Translated_216_residues
MNKDILVAPSMLSADFAKLGQEVEDICKAGCDFVHIDVMDGHFVPNLTMGPMIVQSIAKSSSKPLDIHLMVKNVPFFVDL
FLPLKPAFMSVHIEEVQHLHRLIWYIKESGVKAGVVLNPHTNEQSLEYILPDIDLVLLMSVNPGFGGQSFIPHSVKKLQN
LKKMRDRLNPSCLLEIDGGVSDKNIDILKNAGIDIVVAGSFIFGSTDYAQAISALR
>Mature_216_residues
MNKDILVAPSMLSADFAKLGQEVEDICKAGCDFVHIDVMDGHFVPNLTMGPMIVQSIAKSSSKPLDIHLMVKNVPFFVDL
FLPLKPAFMSVHIEEVQHLHRLIWYIKESGVKAGVVLNPHTNEQSLEYILPDIDLVLLMSVNPGFGGQSFIPHSVKKLQN
LKKMRDRLNPSCLLEIDGGVSDKNIDILKNAGIDIVVAGSFIFGSTDYAQAISALR

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=215, Percent_Identity=36.2790697674419, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI219879828, Length=215, Percent_Identity=35.3488372093023, Blast_Score=126, Evalue=1e-29,
Organism=Homo sapiens, GI24307923, Length=171, Percent_Identity=29.8245614035088, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1789788, Length=215, Percent_Identity=46.5116279069767, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1790523, Length=195, Percent_Identity=35.8974358974359, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1790754, Length=209, Percent_Identity=27.7511961722488, Blast_Score=102, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=219, Percent_Identity=37.4429223744292, Blast_Score=141, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=36.1607142857143, Blast_Score=148, Evalue=5e-37,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=36.9668246445498, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23809; Mature: 23809

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDILVAPSMLSADFAKLGQEVEDICKAGCDFVHIDVMDGHFVPNLTMGPMIVQSIAKS
CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC
SSKPLDIHLMVKNVPFFVDLFLPLKPAFMSVHIEEVQHLHRLIWYIKESGVKAGVVLNPH
CCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
TNEQSLEYILPDIDLVLLMSVNPGFGGQSFIPHSVKKLQNLKKMRDRLNPSCLLEIDGGV
CCCCHHHEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
SDKNIDILKNAGIDIVVAGSFIFGSTDYAQAISALR
CCCCEEEEECCCEEEEEECCEEECCCHHHHHHHHCC
>Mature Secondary Structure
MNKDILVAPSMLSADFAKLGQEVEDICKAGCDFVHIDVMDGHFVPNLTMGPMIVQSIAKS
CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC
SSKPLDIHLMVKNVPFFVDLFLPLKPAFMSVHIEEVQHLHRLIWYIKESGVKAGVVLNPH
CCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
TNEQSLEYILPDIDLVLLMSVNPGFGGQSFIPHSVKKLQNLKKMRDRLNPSCLLEIDGGV
CCCCHHHEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
SDKNIDILKNAGIDIVVAGSFIFGSTDYAQAISALR
CCCCEEEEECCCEEEEEECCEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]