| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
Click here to switch to the map view.
The map label for this gene is 32266784
Identifier: 32266784
GI number: 32266784
Start: 1245933
End: 1246403
Strand: Direct
Name: 32266784
Synonym: HH1285
Alternate gene names: NA
Gene position: 1245933-1246403 (Clockwise)
Preceding gene: 32266783
Following gene: 32266786
Centisome position: 69.25
GC content: 39.28
Gene sequence:
>471_bases ATGAGATATGCTCACTATATACGCACAAAGCGTGGAGCATTTAGTATGATGGAGCTTGTATTTGTTATCATTATACTTGG GATTCTTGCCGCCATTGCGTTGCCACGACTTTCACTCACACGTTCTGATGCTCAACTTATTGCAGTGGAAAATGATATTA TTGGAGCGCTTAATGCAATTCAGCGCGAAGTTTTTAGTCAAAATATTGAACCCTCTACTCTTGATGGAGTAAAAATGCTT GAACTTGCTGGCCTTAGTCATTCGCGCTGGATAGCACAGAATAATGGTGTGCGACTTGCCAAAAATGGTGTGCTTGATAC ACAAAATGATTGCATAACGCTTATGCAAGAAAATGGTAAAATTATCTTTTTTATTCAACCCAAAGCAGATTCTACTTTAT GCACCAAATTACTTGAGCGACATAAGATGAGGCGAGAAGTGCCGCTTAGCACCTCAAATGCAATTTTCTAA
Upstream 100 bases:
>100_bases TATACTTCATTCTGGCAGCAATGGACTTGAAGGACAAGGTGTAATTGATTTTATTTTGCCACCCTTTATGCTTGAAGATT TTAAAAAATAAGGAATAAGT
Downstream 100 bases:
>100_bases CAGAGGAGCATTTAGCTCGTTTGAAATATTATGTGTCATTATTATCATCGCCATTATTATGAGTGTAGGGGTGCGATATA TGGGGCATATTGCACATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MRYAHYIRTKRGAFSMMELVFVIIILGILAAIALPRLSLTRSDAQLIAVENDIIGALNAIQREVFSQNIEPSTLDGVKML ELAGLSHSRWIAQNNGVRLAKNGVLDTQNDCITLMQENGKIIFFIQPKADSTLCTKLLERHKMRREVPLSTSNAIF
Sequences:
>Translated_156_residues MRYAHYIRTKRGAFSMMELVFVIIILGILAAIALPRLSLTRSDAQLIAVENDIIGALNAIQREVFSQNIEPSTLDGVKML ELAGLSHSRWIAQNNGVRLAKNGVLDTQNDCITLMQENGKIIFFIQPKADSTLCTKLLERHKMRREVPLSTSNAIF >Mature_156_residues MRYAHYIRTKRGAFSMMELVFVIIILGILAAIALPRLSLTRSDAQLIAVENDIIGALNAIQREVFSQNIEPSTLDGVKML ELAGLSHSRWIAQNNGVRLAKNGVLDTQNDCITLMQENGKIIFFIQPKADSTLCTKLLERHKMRREVPLSTSNAIF
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17468; Mature: 17468
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYAHYIRTKRGAFSMMELVFVIIILGILAAIALPRLSLTRSDAQLIAVENDIIGALNAI CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHH QREVFSQNIEPSTLDGVKMLELAGLSHSRWIAQNNGVRLAKNGVLDTQNDCITLMQENGK HHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCEEEEEECCCC IIFFIQPKADSTLCTKLLERHKMRREVPLSTSNAIF EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRYAHYIRTKRGAFSMMELVFVIIILGILAAIALPRLSLTRSDAQLIAVENDIIGALNAI CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHH QREVFSQNIEPSTLDGVKMLELAGLSHSRWIAQNNGVRLAKNGVLDTQNDCITLMQENGK HHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCEEEEEECCCC IIFFIQPKADSTLCTKLLERHKMRREVPLSTSNAIF EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA