BacMap

Definition	Helicobacter hepaticus ATCC 51449 chromosome, complete genome.
Accession	NC_004917
Length	1,799,146

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The map label for this gene is 32265971

Identifier: 32265971

GI number: 32265971

Start: 455912

End: 457309

Strand: Direct

Name: 32265971

Synonym: HH0472

Alternate gene names: NA

Gene position: 455912-457309 (Clockwise)

Preceding gene: 32265970

Following gene: 32265972

Centisome position: 25.34

GC content: 38.56

Gene sequence:

>1398_bases
ATGCAAAATCCTGCCCCTACTCGCCAAACTTGGAGCTCTAGTCTCACTTATGTTTTAACCGTTGCAGGAGCGACTATTGG
CTTTGGAGCAACTTGGAGATTCCCATATCTTGTAGGAGAAAATGGTGGTGGTGCGTATGTGCTTGTTTTTATTCTTGCAA
TGATTTTAGTAGGAATCCCCGTGATTTGGGTAGAAAATGTCATTGGCAGACGCGCACATAAAAACGCAATTGATGCCTTT
GGTGGAGAGATAGAAGGCAAAAGCATTCCGCATATCTATAAAATCATTGGCTATTGTGGCATTGCAGGGGCATTTGGGAT
TATGGCATATTATATGGTGCTAGGCGGCTGGGTGATTACTTATATCACAAGTATCCTAAGTGGTGAGCTTAATCTCTCCT
CGCCCATTGATAAAGAACTTGCCCAAAGCTTTTATAATGCCAAAATAGAGCATAATCCGCTAATGATTGGCATTTGGACA
AGTGTATTTGTCGCTATAAATTGGGTAATTCTCAAAAAAGGCATCATTGATGGCATTGAGCGCAGTATGAAATATCTTAT
GCCCTTGCTTTTTATCTGTTTATTTATTATCGTTATCCGCAATCTTACGCTTCCAGGTGCAATGGAGGGCGTGAGATTCT
ATCTTTTGCCCGATTTTAGCAAAATCACAGCTAAGCTTTTCATTGATGTGCTAGGGCAAGTGTTTTTTGCACTTTCCTTA
GGTTTTGGCGTGATGATTACACTTAGCTCCTATCTACAAAAAAATGAAAATATGATTAAAACCGCTGTTGCCACCGGTGT
GCTTAATACACTTATCGCACTCTTAGCTGGATTTATGATTTTTCCCTCACTCTTTAGTTTTGGATTAGAACCAAATCAAG
GACCAAGCCTTGTATTTCAAACCCTCCCTATTGTGTTTTCACATATTTATTTTGGTAATGTCCTAGCCCTTATCTTTTTC
CTGCTTTTAATTACTGCAGCACTTACTACTTCTTTGCCCATTTATGAAGTGATTATTACCGCTTTATATGAAAAGTGTAA
TATCTCACGCACCAATGCAATTAATATCACGCTTAGCTTTATTTTCATATGTGGGAATCTCCCTTGTATCCTCTCTTATG
GAGCTTGGGAGCATATCACTTGGAATGGCAAAAATATCTTTGATAGCTTTGATTTTATCAGCGGCAATATTCTCTTTGTG
CTCACCTCTCTTGGCACATTACTTTTTGTGGGTTGGATTTTAAAAGATGAAGCAAAAAAAGAGTTAAGCAACAATGGCAC
ACTTAATCCGCACCTTGTAAATATATGGTATGCGTATGTTAAATATATCTTGCCCTTCGTGATTGTGCTGATTTTTATCG
CTGGTGTATTTCCTTACGCGCTTAATAGATTCTATTAA

Upstream 100 bases:

>100_bases
ATGCATCATTTGTGCTTGGTGCGATTTTAGAGGGTATTATTTTTAGTGTGCTTATTAAAATTGTATATGTATTTTGGAAA
ACACCCCAAAAGGAGAAATA

Downstream 100 bases:

>100_bases
TCTTTGATAATGAAAGTCTATTTTATACTTCTGCTTGCTTTATGCATAGGAATGAACGCGGATACTTTGCACGCACAAAG
AAAAACGCACGCTCTTAGCA

Product: SNF family sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MQNPAPTRQTWSSSLTYVLTVAGATIGFGATWRFPYLVGENGGGAYVLVFILAMILVGIPVIWVENVIGRRAHKNAIDAF
GGEIEGKSIPHIYKIIGYCGIAGAFGIMAYYMVLGGWVITYITSILSGELNLSSPIDKELAQSFYNAKIEHNPLMIGIWT
SVFVAINWVILKKGIIDGIERSMKYLMPLLFICLFIIVIRNLTLPGAMEGVRFYLLPDFSKITAKLFIDVLGQVFFALSL
GFGVMITLSSYLQKNENMIKTAVATGVLNTLIALLAGFMIFPSLFSFGLEPNQGPSLVFQTLPIVFSHIYFGNVLALIFF
LLLITAALTTSLPIYEVIITALYEKCNISRTNAINITLSFIFICGNLPCILSYGAWEHITWNGKNIFDSFDFISGNILFV
LTSLGTLLFVGWILKDEAKKELSNNGTLNPHLVNIWYAYVKYILPFVIVLIFIAGVFPYALNRFY

Sequences:

>Translated_465_residues
MQNPAPTRQTWSSSLTYVLTVAGATIGFGATWRFPYLVGENGGGAYVLVFILAMILVGIPVIWVENVIGRRAHKNAIDAF
GGEIEGKSIPHIYKIIGYCGIAGAFGIMAYYMVLGGWVITYITSILSGELNLSSPIDKELAQSFYNAKIEHNPLMIGIWT
SVFVAINWVILKKGIIDGIERSMKYLMPLLFICLFIIVIRNLTLPGAMEGVRFYLLPDFSKITAKLFIDVLGQVFFALSL
GFGVMITLSSYLQKNENMIKTAVATGVLNTLIALLAGFMIFPSLFSFGLEPNQGPSLVFQTLPIVFSHIYFGNVLALIFF
LLLITAALTTSLPIYEVIITALYEKCNISRTNAINITLSFIFICGNLPCILSYGAWEHITWNGKNIFDSFDFISGNILFV
LTSLGTLLFVGWILKDEAKKELSNNGTLNPHLVNIWYAYVKYILPFVIVLIFIAGVFPYALNRFY
>Mature_465_residues
MQNPAPTRQTWSSSLTYVLTVAGATIGFGATWRFPYLVGENGGGAYVLVFILAMILVGIPVIWVENVIGRRAHKNAIDAF
GGEIEGKSIPHIYKIIGYCGIAGAFGIMAYYMVLGGWVITYITSILSGELNLSSPIDKELAQSFYNAKIEHNPLMIGIWT
SVFVAINWVILKKGIIDGIERSMKYLMPLLFICLFIIVIRNLTLPGAMEGVRFYLLPDFSKITAKLFIDVLGQVFFALSL
GFGVMITLSSYLQKNENMIKTAVATGVLNTLIALLAGFMIFPSLFSFGLEPNQGPSLVFQTLPIVFSHIYFGNVLALIFF
LLLITAALTTSLPIYEVIITALYEKCNISRTNAINITLSFIFICGNLPCILSYGAWEHITWNGKNIFDSFDFISGNILFV
LTSLGTLLFVGWILKDEAKKELSNNGTLNPHLVNIWYAYVKYILPFVIVLIFIAGVFPYALNRFY

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=381, Percent_Identity=28.3464566929134, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI188528618, Length=429, Percent_Identity=26.5734265734266, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI7657587, Length=382, Percent_Identity=27.4869109947644, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI21361581, Length=379, Percent_Identity=25.5936675461741, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI4507041, Length=395, Percent_Identity=26.3291139240506, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI171184408, Length=383, Percent_Identity=25.8485639686684, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI171184406, Length=383, Percent_Identity=25.8485639686684, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI171184404, Length=383, Percent_Identity=25.8485639686684, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI289191351, Length=406, Percent_Identity=26.8472906403941, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI4557046, Length=406, Percent_Identity=26.8472906403941, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI289191377, Length=406, Percent_Identity=26.8472906403941, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI92859670, Length=414, Percent_Identity=26.3285024154589, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI51468073, Length=303, Percent_Identity=28.0528052805281, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI33354281, Length=302, Percent_Identity=27.8145695364238, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI197276623, Length=354, Percent_Identity=25.7062146892655, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI54607094, Length=354, Percent_Identity=25.7062146892655, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=28.956228956229, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI58219014, Length=305, Percent_Identity=27.5409836065574, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI5032097, Length=348, Percent_Identity=23.5632183908046, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI134304856, Length=388, Percent_Identity=24.4845360824742, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI11181770, Length=303, Percent_Identity=26.4026402640264, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI6005715, Length=409, Percent_Identity=24.9388753056235, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI67782317, Length=399, Percent_Identity=25.31328320802, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI67782313, Length=392, Percent_Identity=25.5102040816327, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI67782315, Length=392, Percent_Identity=25.5102040816327, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI218563756, Length=348, Percent_Identity=22.7011494252874, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI12408638, Length=281, Percent_Identity=23.8434163701068, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI289191353, Length=206, Percent_Identity=28.6407766990291, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI300360519, Length=191, Percent_Identity=27.2251308900524, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI21361693, Length=212, Percent_Identity=25.9433962264151, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI197276625, Length=129, Percent_Identity=31.7829457364341, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI55749589, Length=295, Percent_Identity=24.0677966101695, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI226437581, Length=255, Percent_Identity=24.3137254901961, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI218563758, Length=108, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=456, Percent_Identity=24.5614035087719, Blast_Score=131, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI133952791, Length=471, Percent_Identity=23.9915074309979, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71995588, Length=500, Percent_Identity=23.8, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17554804, Length=362, Percent_Identity=24.3093922651934, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17555248, Length=171, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17569475, Length=406, Percent_Identity=21.9211822660099, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71998244, Length=358, Percent_Identity=24.8603351955307, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17542050, Length=124, Percent_Identity=26.6129032258064, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24762620, Length=419, Percent_Identity=29.5942720763723, Blast_Score=149, Evalue=5e-36,
Organism=Drosophila melanogaster, GI45550877, Length=402, Percent_Identity=27.8606965174129, Blast_Score=145, Evalue=5e-35,
Organism=Drosophila melanogaster, GI45551183, Length=402, Percent_Identity=27.8606965174129, Blast_Score=145, Evalue=5e-35,
Organism=Drosophila melanogaster, GI17136952, Length=380, Percent_Identity=24.7368421052632, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24661428, Length=495, Percent_Identity=25.8585858585859, Blast_Score=141, Evalue=1e-33,
Organism=Drosophila melanogaster, GI281364394, Length=380, Percent_Identity=24.7368421052632, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI28574704, Length=380, Percent_Identity=24.7368421052632, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI17136950, Length=380, Percent_Identity=24.7368421052632, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI28574702, Length=380, Percent_Identity=24.7368421052632, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI45551088, Length=451, Percent_Identity=23.059866962306, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24652942, Length=451, Percent_Identity=23.059866962306, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19921936, Length=390, Percent_Identity=24.3589743589744, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI281364136, Length=406, Percent_Identity=24.6305418719212, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24582567, Length=445, Percent_Identity=25.8426966292135, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24655079, Length=301, Percent_Identity=29.2358803986711, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI281363702, Length=452, Percent_Identity=23.4513274336283, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24639514, Length=518, Percent_Identity=22.3938223938224, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI221329674, Length=518, Percent_Identity=22.3938223938224, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI281365034, Length=467, Percent_Identity=21.4132762312634, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24639516, Length=536, Percent_Identity=21.6417910447761, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24654186, Length=191, Percent_Identity=35.6020942408377, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI19921352, Length=466, Percent_Identity=22.1030042918455, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24584353, Length=466, Percent_Identity=22.1030042918455, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281363700, Length=310, Percent_Identity=25.1612903225806, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24639853, Length=478, Percent_Identity=23.4309623430962, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24582569, Length=408, Percent_Identity=24.2647058823529, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 51597; Mature: 51597

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNPAPTRQTWSSSLTYVLTVAGATIGFGATWRFPYLVGENGGGAYVLVFILAMILVGIP
CCCCCCCHHHHHCCHHEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCH
VIWVENVIGRRAHKNAIDAFGGEIEGKSIPHIYKIIGYCGIAGAFGIMAYYMVLGGWVIT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YITSILSGELNLSSPIDKELAQSFYNAKIEHNPLMIGIWTSVFVAINWVILKKGIIDGIE
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
RSMKYLMPLLFICLFIIVIRNLTLPGAMEGVRFYLLPDFSKITAKLFIDVLGQVFFALSL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
GFGVMITLSSYLQKNENMIKTAVATGVLNTLIALLAGFMIFPSLFSFGLEPNQGPSLVFQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
TLPIVFSHIYFGNVLALIFFLLLITAALTTSLPIYEVIITALYEKCNISRTNAINITLSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH
IFICGNLPCILSYGAWEHITWNGKNIFDSFDFISGNILFVLTSLGTLLFVGWILKDEAKK
HHHHCCCHHEEECCCCCEEEECCCHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELSNNGTLNPHLVNIWYAYVKYILPFVIVLIFIAGVFPYALNRFY
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNPAPTRQTWSSSLTYVLTVAGATIGFGATWRFPYLVGENGGGAYVLVFILAMILVGIP
CCCCCCCHHHHHCCHHEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCH
VIWVENVIGRRAHKNAIDAFGGEIEGKSIPHIYKIIGYCGIAGAFGIMAYYMVLGGWVIT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YITSILSGELNLSSPIDKELAQSFYNAKIEHNPLMIGIWTSVFVAINWVILKKGIIDGIE
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
RSMKYLMPLLFICLFIIVIRNLTLPGAMEGVRFYLLPDFSKITAKLFIDVLGQVFFALSL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
GFGVMITLSSYLQKNENMIKTAVATGVLNTLIALLAGFMIFPSLFSFGLEPNQGPSLVFQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
TLPIVFSHIYFGNVLALIFFLLLITAALTTSLPIYEVIITALYEKCNISRTNAINITLSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH
IFICGNLPCILSYGAWEHITWNGKNIFDSFDFISGNILFVLTSLGTLLFVGWILKDEAKK
HHHHCCCHHEEECCCCCEEEECCCHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELSNNGTLNPHLVNIWYAYVKYILPFVIVLIFIAGVFPYALNRFY
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]