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The map label for this gene is pal [H]

Identifier: 32265934

GI number: 32265934

Start: 417669

End: 418130

Strand: Direct

Name: pal [H]

Synonym: HH0435

Alternate gene names: 32265934

Gene position: 417669-418130 (Clockwise)

Preceding gene: 32265933

Following gene: 32265935

Centisome position: 23.21

GC content: 40.04

Gene sequence:

>462_bases
ATGAAAAAATATATTGCAATGGGTGTTTTAGCTGCGCTAATTTCAGTGGGTTGTTCAGAACCTGATGCAGCTGATTCTGG
TTCTGGGAAAGCTGCTGGCGGAGATAACTTTGTAGATTTGGCTGGTGGAGCTGGTGGTTATGTAAAAGTCTTATTTGATT
TTGATAAATATGATATCCGTTCTGATATGGAAGATCGTGTTGAAAAAAGTGCAGCTGCGCTTAAGAGCACAGGTGCAAAA
GTTGTGCTTGAGGGACATACTGACTCTTATGGTTCAGATGCTTACAACTATGCTCTTGGCACAAAAAGAGCAAATGCAGT
TAAAAATGCTCTCACAACACGTGGAGTAAATGCTTCTCAAATCAAAACGGTAAGCTATGGTGAAAGCAAACCCACTTGCA
CAAGCGATACTCCTGAATGTAATCAAGAAAATAGACGTGTTGAGTTTAAACTCGCAAAGTAA

Upstream 100 bases:

>100_bases
TTTTCCCTCTCATCAAAATGAAAATCCAAGCTTTTGATTGGTAAGATATTTACTTTTATAGCGTAGAATCTTGCCATTTT
AATTCTTAAAGGAGATGATG

Downstream 100 bases:

>100_bases
TTTAAACAATATGGGGAATAAAGTTGATAAAGCGTTATCTTTTATTCACTTTTATTCCTCTTTTACTCTATACAAATGAA
CCTTCTGCTTTTGAAAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKKYIAMGVLAALISVGCSEPDAADSGSGKAAGGDNFVDLAGGAGGYVKVLFDFDKYDIRSDMEDRVEKSAAALKSTGAK
VVLEGHTDSYGSDAYNYALGTKRANAVKNALTTRGVNASQIKTVSYGESKPTCTSDTPECNQENRRVEFKLAK

Sequences:

>Translated_153_residues
MKKYIAMGVLAALISVGCSEPDAADSGSGKAAGGDNFVDLAGGAGGYVKVLFDFDKYDIRSDMEDRVEKSAAALKSTGAK
VVLEGHTDSYGSDAYNYALGTKRANAVKNALTTRGVNASQIKTVSYGESKPTCTSDTPECNQENRRVEFKLAK
>Mature_153_residues
MKKYIAMGVLAALISVGCSEPDAADSGSGKAAGGDNFVDLAGGAGGYVKVLFDFDKYDIRSDMEDRVEKSAAALKSTGAK
VVLEGHTDSYGSDAYNYALGTKRANAVKNALTTRGVNASQIKTVSYGESKPTCTSDTPECNQENRRVEFKLAK

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=159, Percent_Identity=37.7358490566038, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1788957, Length=152, Percent_Identity=32.8947368421053, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 16118; Mature: 16118

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYIAMGVLAALISVGCSEPDAADSGSGKAAGGDNFVDLAGGAGGYVKVLFDFDKYDIR
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHH
SDMEDRVEKSAAALKSTGAKVVLEGHTDSYGSDAYNYALGTKRANAVKNALTTRGVNASQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHH
IKTVSYGESKPTCTSDTPECNQENRRVEFKLAK
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKKYIAMGVLAALISVGCSEPDAADSGSGKAAGGDNFVDLAGGAGGYVKVLFDFDKYDIR
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHH
SDMEDRVEKSAAALKSTGAKVVLEGHTDSYGSDAYNYALGTKRANAVKNALTTRGVNASQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHH
IKTVSYGESKPTCTSDTPECNQENRRVEFKLAK
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]