| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is fdnG-1 [H]
Identifier: 308535295
GI number: 308535295
Start: 2635756
End: 2638785
Strand: Reverse
Name: fdnG-1 [H]
Synonym: NA
Alternate gene names: 308535295
Gene position: 2638785-2635756 (Counterclockwise)
Preceding gene: 197118652
Following gene: 197118647
Centisome position: 57.18
GC content: 61.65
Gene sequence:
>3030_bases ATGGCTGTTTCACGGAGGGAGTTTCTGCAGGGAGGGGCGCTGGCTACGGCACTGGTCCTTTCCGGCAAAAAAGCGGAAGC GGGCGGAGCCGATGCCCCGCAGATGCGCACCAAGGGGCTGAAAAGCTCGACCACCATCTGTCCTTTCTGCGCGGTAGGTT GTGGGCTTGTGGTGCATACCAAGAACGGCAAGATCGTCAACATCGAGGGGGACACCCAGCATCCGATCAACCAGGGTGCG CTTTGCTCGAAAGGTAGCGCGCTGTTCCAGGTCGCCAACAACGAGCGCCGCCTGCAGAAGGTCATGTACCGTGCTCCCGG CAGCGACAAGTTCGAAGAGAAGAGCTGGGATTGGGCGCTGGAGCGGATCAGCCAGAAGATGAAGGAGACCCGCGACAAGA CCTTCAAGGCCAAAGAGATCAACAAGAAGGACAACAAGGAATACGTCGTGAACCGCACCGAAGGGATGGCTTTCCTGGGC GGCGCCGGTCTCGACAACGAGGAGTGCTACCTCTGGAGCAAGTTTGCCCGCTCTATGGGGGTCGCGAACCTCGAACACCA AGCCCGAATATGACACTCCGCTACAGTCGCCGGTCTGGCGGCTTCGTTTGGACGTGGGGCAATGACCAACCACTGGATTG ACCTGAAGAACGCCGATGCCATCCTGGCCATCGGTTGCAACCCTGCAGAAAACCACCCGATCTCGATGAAATGGATCGAG GCGGCTATGGATAACGGCGGCAAGCTTCTCGCCGTCGACCCGCGCTTCACCAGGACCGGCTCCAAGGCCGATCACTACGC GCAGATCCGTCCCGGCACCGACATCGCCTTTTTGGGCGGGATGATCAACTTCGCGCTGCAGAACAACATGATCCACGAGG AGTACGTCCGCGAGTACACCAACGCCTCCTTCATCGTAAACGAGAAGTACGACTTCAACGAGGGTATCTTCTGCGCCTTC GACGACCAGGAGAAGACCTATGACCCGAAGGCCTGGGCCTACGCGGTCGACGGCTCCGGCAACCCCAAGCGCGACAAGTC GCTGAAGGACCCGCGCTGCGTCTACCAGCAGCTGAAGAAGCACTACTCCCGCTACACCGTCGACATGGTCTGCTCCATCA CCGGCACCAAGAAGGAAGACTACGTCGCCGTCGCCAAGGCATTCTGCTCCACCGGGCGCGCCGACAAGGCCGGCACCATC CTCTACGCGATGGGTATCACACAGTCCACCCACGGCACCCAGAACGTCCGCGCGACCGCCATGCTGCAGATGCTTTTGGG CAACATCGGCATCGCCGGCGGCGGCGTGAATGCGCTGCGCGGCGAGAGCAACGTACAGGGCTCCTCCGATTACGGCCTGC TCTTCCACCTGCTCCCGGGCTACCTGAAGTCCCCTGAGTTCGACAACGTCGACCTGAAGGCCTACCTGGAGAAGTGGACC CCGAAGACCAAAGACGCAAAGAGCGCCAACTGGTGGGGGAACACCCCGAAGTACACGGTGAGCCTCCTCAAAGCCTGGTA CGGCGACAACGCCACCGCGGAGAACGGCTTCTGCTACGACTACCTCCCCAAGAGAAGCGGCAACTACTCCTTCATGAAGC TGATGGAGAAGATGGGCAAGGGCGAACTGCAGGGCCTCGTCTGCATGGGGCAGAACCCGGCGGTAGGCGGCCCGGATTCC CTGAAGACCCGCGAGGCGCTGGGAAAACTCGACTGGCTCGTCACCGTCGACCTCTGGGAGACCGAGACCTCCATCTTCTG GAAGCGCCCCGGCGTGAACCCGAAGGACATCAAGACCGAGGTCTTCATGCTGCCGGCAGCCTCCTCCGTCGAGAAGGAAG GCTCCATCTCCAACTCCGGCCGCTGGGCCCAGTGGCGCTACAAGGCTGCGGAACCGGTAGGGGATGCGAAGAGCGACCTC TGGATCATCGATCAGTTCGCGAAGCACGTGAAGAAGGCGTACCAGAAAGGGGGAACCTTCCCCGAGCCGATCACCAAGCT CTCCTGGAACTACGGCGAAGGCCACGAGCCTGAAGTGCACCTGGTCGCCAAGGAGATCAACGGCTACTTCACCAAGGACA TGACCATCGTCGACAAGGACAAGACCCTCGAGTTCAAGAAGGGTGACCAGGTCCCGATGTTCAAGTACCTGCAGGACGAC GGCTCCACCGTCTCCGGCTGCTGGATCTACTGCGGCTCCTACACGAAAGACGGCAACCAGATGGCCCGCCGCGACGCCAC CGACCCGACCGGGCTCGGCATGTTCCCGAAGTGGTCCTGGTGCTGGCCGGTCAACCGCCGCATCATCTACAACAGGGCCT CCGTTAACCCGGACGGCGCGCCGTTCAACCCCAAGCGCGCGGTCATCGCCTGGGACGCGCTGGAGAAGAAGTGGAAAGGC GACGTGCCCGACGGCCCCTGGCCGCCGATGAACGACGCGAAGGAAGGGAAGTACCCCTTCATCATGGTTCCTGAAGGTCA CGGCCGCCTCTACGCGCTAGACATGAAGGACGGTCCGTTCCCCGAGCACTACGAGCCGATCGAAAGCCCGGCCAAGAACC TCTTGTCCAAGGTGCAGAGCAACCCGGCGGTCAAGGTCCCGGCCAACATGTCCAGCGACCTGAACAAGTACCCGTTCGTC GGCACCACCTACAGGATGACCGAGCACTGGCAGGCAGGCGCCATGACCCGCAGCCTTCCCTGGCTGGTGGAGCTGGTCCC GACCATGTTCGTCGAGATCTCCCAGACCCTCGCCTCCTCCAAGGGGATCAACAACGGCGACCAGGTGAAGATCACCACCG AGCGCGGTTCCATCGAGGCGAAGGCCCTGGTCACCACCAGGCTCAAGCCCTTCAACGTGCAGGGGAAAATGGTAGAGCAG GTGGGCCTTCCCTGGCACTTCGGTTATGCAGGTCTCGCTACCGGCGACTCGGGCAACGTCCTGACCCCGTCCGTCGGCTG CGCCAATACGAGCATCCCCGAATTCAAGGCATTCCTCTGCAACATCGAGAAAGGGGGTAAACGCGCATGA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: formate dehydrogenase major subunit
Products: NA
Alternate protein names: FDH subunit alpha; Formate dehydrogenase large subunit [H]
Number of amino acids: Translated: 1009; Mature: 1008
Protein sequence:
NA
Sequences:
>Translated_1009_residues MAVSRREFLQGGALATALVLSGKKAEAGGADAPQMRTKGLKSSTTICPFCAVGCGLVVHTKNGKIVNIEGDTQHPINQGA LCSKGSALFQVANNERRLQKVMYRAPGSDKFEEKSWDWALERISQKMKETRDKTFKAKEINKKDNKEYVVNRTEGMAFLG GAGLDNEECYLWSKFARSMGVANLEHQARI*HSATVAGLAASFGRGAMTNHWIDLKNADAILAIGCNPAENHPISMKWIE AAMDNGGKLLAVDPRFTRTGSKADHYAQIRPGTDIAFLGGMINFALQNNMIHEEYVREYTNASFIVNEKYDFNEGIFCAF DDQEKTYDPKAWAYAVDGSGNPKRDKSLKDPRCVYQQLKKHYSRYTVDMVCSITGTKKEDYVAVAKAFCSTGRADKAGTI LYAMGITQSTHGTQNVRATAMLQMLLGNIGIAGGGVNALRGESNVQGSSDYGLLFHLLPGYLKSPEFDNVDLKAYLEKWT PKTKDAKSANWWGNTPKYTVSLLKAWYGDNATAENGFCYDYLPKRSGNYSFMKLMEKMGKGELQGLVCMGQNPAVGGPDS LKTREALGKLDWLVTVDLWETETSIFWKRPGVNPKDIKTEVFMLPAASSVEKEGSISNSGRWAQWRYKAAEPVGDAKSDL WIIDQFAKHVKKAYQKGGTFPEPITKLSWNYGEGHEPEVHLVAKEINGYFTKDMTIVDKDKTLEFKKGDQVPMFKYLQDD GSTVSGCWIYCGSYTKDGNQMARRDATDPTGLGMFPKWSWCWPVNRRIIYNRASVNPDGAPFNPKRAVIAWDALEKKWKG DVPDGPWPPMNDAKEGKYPFIMVPEGHGRLYALDMKDGPFPEHYEPIESPAKNLLSKVQSNPAVKVPANMSSDLNKYPFV GTTYRMTEHWQAGAMTRSLPWLVELVPTMFVEISQTLASSKGINNGDQVKITTERGSIEAKALVTTRLKPFNVQGKMVEQ VGLPWHFGYAGLATGDSGNVLTPSVGCANTSIPEFKAFLCNIEKGGKRA >Mature_1008_residues AVSRREFLQGGALATALVLSGKKAEAGGADAPQMRTKGLKSSTTICPFCAVGCGLVVHTKNGKIVNIEGDTQHPINQGAL CSKGSALFQVANNERRLQKVMYRAPGSDKFEEKSWDWALERISQKMKETRDKTFKAKEINKKDNKEYVVNRTEGMAFLGG AGLDNEECYLWSKFARSMGVANLEHQARI*HSATVAGLAASFGRGAMTNHWIDLKNADAILAIGCNPAENHPISMKWIEA AMDNGGKLLAVDPRFTRTGSKADHYAQIRPGTDIAFLGGMINFALQNNMIHEEYVREYTNASFIVNEKYDFNEGIFCAFD DQEKTYDPKAWAYAVDGSGNPKRDKSLKDPRCVYQQLKKHYSRYTVDMVCSITGTKKEDYVAVAKAFCSTGRADKAGTIL YAMGITQSTHGTQNVRATAMLQMLLGNIGIAGGGVNALRGESNVQGSSDYGLLFHLLPGYLKSPEFDNVDLKAYLEKWTP KTKDAKSANWWGNTPKYTVSLLKAWYGDNATAENGFCYDYLPKRSGNYSFMKLMEKMGKGELQGLVCMGQNPAVGGPDSL KTREALGKLDWLVTVDLWETETSIFWKRPGVNPKDIKTEVFMLPAASSVEKEGSISNSGRWAQWRYKAAEPVGDAKSDLW IIDQFAKHVKKAYQKGGTFPEPITKLSWNYGEGHEPEVHLVAKEINGYFTKDMTIVDKDKTLEFKKGDQVPMFKYLQDDG STVSGCWIYCGSYTKDGNQMARRDATDPTGLGMFPKWSWCWPVNRRIIYNRASVNPDGAPFNPKRAVIAWDALEKKWKGD VPDGPWPPMNDAKEGKYPFIMVPEGHGRLYALDMKDGPFPEHYEPIESPAKNLLSKVQSNPAVKVPANMSSDLNKYPFVG TTYRMTEHWQAGAMTRSLPWLVELVPTMFVEISQTLASSKGINNGDQVKITTERGSIEAKALVTTRLKPFNVQGKMVEQV GLPWHFGYAGLATGDSGNVLTPSVGCANTSIPEFKAFLCNIEKGGKRA
Specific function: Alpha chain of the formate dehydrogenase (FDH) catalyze the reversible two-electron oxidation of formate to carbon dioxide. FDH loses activity in the presence of air, but this activity can be restored. The alpha subunit of formate dehydrogenase forms the
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868719, Length=1035, Percent_Identity=46.6666666666667, Blast_Score=917, Evalue=0.0, Organism=Escherichia coli, GI3868720, Length=1032, Percent_Identity=45.5426356589147, Blast_Score=881, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=618, Percent_Identity=27.5080906148867, Blast_Score=206, Evalue=5e-54, Organism=Escherichia coli, GI1788534, Length=663, Percent_Identity=24.8868778280543, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1787870, Length=454, Percent_Identity=23.1277533039648, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081797, Length=426, Percent_Identity=24.6478873239437, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1787778, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 111624; Mature: 111493
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSRREFLQGGALATALVLSGKKAEAGGADAPQMRTKGLKSSTTICPFCAVGCGLVVHT CCCCHHHHHCCCHHHHHHEECCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCCEEEEC KNGKIVNIEGDTQHPINQGALCSKGSALFQVANNERRLQKVMYRAPGSDKFEEKSWDWAL CCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHH ERISQKMKETRDKTFKAKEINKKDNKEYVVNRTEGMAFLGGAGLDNEECYLWSKFARSMG HHHHHHHHHHHHHCEEHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCC VANLEHQARIHSATVAGLAASFGRGAMTNHWIDLKNADAILAIGCNPAENHPISMKWIEA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCCEEHHHHHH AMDNGGKLLAVDPRFTRTGSKADHYAQIRPGTDIAFLGGMINFALQNNMIHEEYVREYTN HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC ASFIVNEKYDFNEGIFCAFDDQEKTYDPKAWAYAVDGSGNPKRDKSLKDPRCVYQQLKKH CEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH YSRYTVDMVCSITGTKKEDYVAVAKAFCSTGRADKAGTILYAMGITQSTHGTQNVRATAM HHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH LQMLLGNIGIAGGGVNALRGESNVQGSSDYGLLFHLLPGYLKSPEFDNVDLKAYLEKWTP HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC KTKDAKSANWWGNTPKYTVSLLKAWYGDNATAENGFCYDYLPKRSGNYSFMKLMEKMGKG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCC ELQGLVCMGQNPAVGGPDSLKTREALGKLDWLVTVDLWETETSIFWKRPGVNPKDIKTEV CCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCHHHCCEEE FMLPAASSVEKEGSISNSGRWAQWRYKAAEPVGDAKSDLWIIDQFAKHVKKAYQKGGTFP EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCC EPITKLSWNYGEGHEPEVHLVAKEINGYFTKDMTIVDKDKTLEFKKGDQVPMFKYLQDDG CCHHHEECCCCCCCCCCEEEEEEECCCEEECCCEEEECCCEEEECCCCCCCHHHHHHCCC STVSGCWIYCGSYTKDGNQMARRDATDPTGLGMFPKWSWCWPVNRRIIYNRASVNPDGAP CEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCC FNPKRAVIAWDALEKKWKGDVPDGPWPPMNDAKEGKYPFIMVPEGHGRLYALDMKDGPFP CCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCC EHYEPIESPAKNLLSKVQSNPAVKVPANMSSDLNKYPFVGTTYRMTEHWQAGAMTRSLPW CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEHHHHHHCCHHCCCHH LVELVPTMFVEISQTLASSKGINNGDQVKITTERGSIEAKALVTTRLKPFNVQGKMVEQV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHC GLPWHFGYAGLATGDSGNVLTPSVGCANTSIPEFKAFLCNIEKGGKRA CCCEECCCCEEEECCCCCEECCCCCCCCCCCHHHHHHHEECCCCCCCC >Mature Secondary Structure AVSRREFLQGGALATALVLSGKKAEAGGADAPQMRTKGLKSSTTICPFCAVGCGLVVHT CCCHHHHHCCCHHHHHHEECCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCCEEEEC KNGKIVNIEGDTQHPINQGALCSKGSALFQVANNERRLQKVMYRAPGSDKFEEKSWDWAL CCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHH ERISQKMKETRDKTFKAKEINKKDNKEYVVNRTEGMAFLGGAGLDNEECYLWSKFARSMG HHHHHHHHHHHHHCEEHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCC VANLEHQARIHSATVAGLAASFGRGAMTNHWIDLKNADAILAIGCNPAENHPISMKWIEA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCCEEHHHHHH AMDNGGKLLAVDPRFTRTGSKADHYAQIRPGTDIAFLGGMINFALQNNMIHEEYVREYTN HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC ASFIVNEKYDFNEGIFCAFDDQEKTYDPKAWAYAVDGSGNPKRDKSLKDPRCVYQQLKKH CEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH YSRYTVDMVCSITGTKKEDYVAVAKAFCSTGRADKAGTILYAMGITQSTHGTQNVRATAM HHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH LQMLLGNIGIAGGGVNALRGESNVQGSSDYGLLFHLLPGYLKSPEFDNVDLKAYLEKWTP HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC KTKDAKSANWWGNTPKYTVSLLKAWYGDNATAENGFCYDYLPKRSGNYSFMKLMEKMGKG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCC ELQGLVCMGQNPAVGGPDSLKTREALGKLDWLVTVDLWETETSIFWKRPGVNPKDIKTEV CCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCHHHCCEEE FMLPAASSVEKEGSISNSGRWAQWRYKAAEPVGDAKSDLWIIDQFAKHVKKAYQKGGTFP EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCC EPITKLSWNYGEGHEPEVHLVAKEINGYFTKDMTIVDKDKTLEFKKGDQVPMFKYLQDDG CCHHHEECCCCCCCCCCEEEEEEECCCEEECCCEEEECCCEEEECCCCCCCHHHHHHCCC STVSGCWIYCGSYTKDGNQMARRDATDPTGLGMFPKWSWCWPVNRRIIYNRASVNPDGAP CEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCC FNPKRAVIAWDALEKKWKGDVPDGPWPPMNDAKEGKYPFIMVPEGHGRLYALDMKDGPFP CCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCC EHYEPIESPAKNLLSKVQSNPAVKVPANMSSDLNKYPFVGTTYRMTEHWQAGAMTRSLPW CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEHHHHHHCCHHCCCHH LVELVPTMFVEISQTLASSKGINNGDQVKITTERGSIEAKALVTTRLKPFNVQGKMVEQV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHC GLPWHFGYAGLATGDSGNVLTPSVGCANTSIPEFKAFLCNIEKGGKRA CCCEECCCCEEEECCCCCEECCCCCCCCCCCHHHHHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA