Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 308513337

GI number: 308513337

Start: 3412645

End: 3413418

Strand: Direct

Name: yagI [H]

Synonym: NA

Alternate gene names: 308513337

Gene position: 3412645-3413418 (Clockwise)

Preceding gene: 39998173

Following gene: 39998207

Centisome position: 89.47

GC content: 61.89

Gene sequence:

>774_bases
ATGATCCTGGCCGTTTCCCATGCGTTAGACCTGCTTGAGCAGTTTCATGCCGAGGACGCGGTCGAGTTGGGCGTCACGGA
GATATCCAGAAGGCTCAAGCTTCACAAAAACAACGTGTTCAGGCTCTTGGCGACCCTCGAGTCGCGCGGCTACGTGGAGC
AGAACCCCATAACCGGCAATTACCGCCTCGGCCTCAGGACACTTGAGCTGCGCCAGTCAATGATCCGCCAGATGGCGCTG
CTCCCCTACGCCAAGCCGGCCCTCGAAGAACTCGTGAAGGAGTGCGACGAAACGGCTTACGTGGCCGTTCTCAAGGAGAA
TCTGAGCGTCTACCTTTACGGTGTGGAGAGCCACGCCACGGTCCGGGTCGTTTCGCGCCTCGGCTCGCGCCTGCCGGCCT
ACTGCACCGCCGCGGGCAAGGTAATGCTCGCGGGACTTCCCGAAAACGACCTCGAACGGTATCTCTCCCGGACGGAACTG
GCCCCCTTCACCCCCAATACCATCGTTGAGCGGGACAAGCTGCGGGAACACCTGAAAGAAGTGGCTGCCCAGGGGCATGC
CATTGACAATGAAGAGCTGGAAATCGGCGTCCGCGGCGTAGCAGCCCCTATCCATGACTACCGGTCGGTGGTGGTCGGTG
CGGTGATCATCTCAGGCCCGGCCATGCGCTTCACCGATGGCCGGGTACGCGACGAACTGACTCCCCTGGCATGCCGGACC
GCCGAGGCCATCTCGGTGAAACTCGGGTATGCCGCTCCTACCGCGGGTCTGTAA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:
NA

Sequences:

>Translated_257_residues
MILAVSHALDLLEQFHAEDAVELGVTEISRRLKLHKNNVFRLLATLESRGYVEQNPITGNYRLGLRTLELRQSMIRQMAL
LPYAKPALEELVKECDETAYVAVLKENLSVYLYGVESHATVRVVSRLGSRLPAYCTAAGKVMLAGLPENDLERYLSRTEL
APFTPNTIVERDKLREHLKEVAAQGHAIDNEELEIGVRGVAAPIHDYRSVVVGAVIISGPAMRFTDGRVRDELTPLACRT
AEAISVKLGYAAPTAGL
>Mature_257_residues
MILAVSHALDLLEQFHAEDAVELGVTEISRRLKLHKNNVFRLLATLESRGYVEQNPITGNYRLGLRTLELRQSMIRQMAL
LPYAKPALEELVKECDETAYVAVLKENLSVYLYGVESHATVRVVSRLGSRLPAYCTAAGKVMLAGLPENDLERYLSRTEL
APFTPNTIVERDKLREHLKEVAAQGHAIDNEELEIGVRGVAAPIHDYRSVVVGAVIISGPAMRFTDGRVRDELTPLACRT
AEAISVKLGYAAPTAGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=255, Percent_Identity=35.2941176470588, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788131, Length=229, Percent_Identity=34.4978165938865, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1786715, Length=228, Percent_Identity=33.7719298245614, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87082359, Length=250, Percent_Identity=29.6, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789999, Length=220, Percent_Identity=33.1818181818182, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790752, Length=225, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788581, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28373; Mature: 28373

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAVSHALDLLEQFHAEDAVELGVTEISRRLKLHKNNVFRLLATLESRGYVEQNPITGN
CEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
YRLGLRTLELRQSMIRQMALLPYAKPALEELVKECDETAYVAVLKENLSVYLYGVESHAT
EEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHEEECCCEEEEEEECCCHH
VRVVSRLGSRLPAYCTAAGKVMLAGLPENDLERYLSRTELAPFTPNTIVERDKLREHLKE
HHHHHHHHCCCCHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VAAQGHAIDNEELEIGVRGVAAPIHDYRSVVVGAVIISGPAMRFTDGRVRDELTPLACRT
HHHCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHCCCHHHHHC
AEAISVKLGYAAPTAGL
CHHEEEEECCCCCCCCC
>Mature Secondary Structure
MILAVSHALDLLEQFHAEDAVELGVTEISRRLKLHKNNVFRLLATLESRGYVEQNPITGN
CEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
YRLGLRTLELRQSMIRQMALLPYAKPALEELVKECDETAYVAVLKENLSVYLYGVESHAT
EEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHEEECCCEEEEEEECCCHH
VRVVSRLGSRLPAYCTAAGKVMLAGLPENDLERYLSRTELAPFTPNTIVERDKLREHLKE
HHHHHHHHCCCCHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VAAQGHAIDNEELEIGVRGVAAPIHDYRSVVVGAVIISGPAMRFTDGRVRDELTPLACRT
HHHCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHCCCHHHHHC
AEAISVKLGYAAPTAGL
CHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]