Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 308513315

GI number: 308513315

Start: 2500183

End: 2500527

Strand: Reverse

Name: ybeY [C]

Synonym: NA

Alternate gene names: 308513315

Gene position: 2500527-2500183 (Counterclockwise)

Preceding gene: 39997383

Following gene: 39997381

Centisome position: 65.56

GC content: 64.06

Gene sequence:

>345_bases
TTGTCGGTGGTCATCACCGGCGATCTGGGCATCCGCCGGGTCAACCGCGACTACCTCGGCAAAGACCGCCCCACCAATGT
CATCTCGTTTGCCATGGGGGAGGGGGATTTCGGTGACCTCAATCCCGATGTGCTGGGTGACGTGATCATCTCGGCCGACA
CGGCGGCCCGGGAGGCGGAAGAGGCGGGCATCGCCTTCTGGTCGCGGCTCTGTTTCCTCCTGCTCCACGGCACCCTCCAC
ATAACCGGGTACGATCACGAGCGGAGCGGCGAGGCCGAAGCCCGGCGGATGGAAGCAAAGGAACGTGAGATCTTCGCCCT
CCTCGAGAACGGCGGACTTGTCTAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:
NA

Sequences:

>Translated_114_residues
MSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAEEAGIAFWSRLCFLLLHGTLH
ITGYDHERSGEAEARRMEAKEREIFALLENGGLV
>Mature_113_residues
SVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAEEAGIAFWSRLCFLLLHGTLHI
TGYDHERSGEAEARRMEAKEREIFALLENGGLV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=75, Percent_Identity=36, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 12521; Mature: 12390

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAE
CEEEEECCCCEEECCHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHH
EAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALLENGGLV
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure 
SVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAE
EEEEECCCCEEECCHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHH
EAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALLENGGLV
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA