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The map label for this gene is ycaJ [C]

Identifier: 304570584

GI number: 304570584

Start: 2041035

End: 2042321

Strand: Direct

Name: ycaJ [C]

Synonym: NA

Alternate gene names: 304570584

Gene position: 2041035-2042321 (Clockwise)

Preceding gene: 78357040

Following gene: 78357042

Centisome position: 54.72

GC content: 57.58

Gene sequence:

>1287_bases
TTGCCTTGGGCTGCACTTCTGGAGCAAACAACGATAAACCGGAGCATTCCCCTGTTACACCTGACACAACCACAGCAGCC
CCTGCCGGAAAAAATCCGGCCGGCCGATCTGGAAGGCTTTGTCGGACAAACACACCTGCGTGACAGGCTGCGGGCGCTTA
TGAACGCCTCGCGTCTGCCCAGTCTGTTGTTTTTCGGCCCTCCGGGCTGTGGCAAATCAACCATAGCACTGCTGCTTGCC
CGCAACACCGGCCAAAAATACATCCGTATCAGCGCGCCGGAAGCCGGTCTGCAGCAGCTGCGCAAGTCTCTGGCGGGAGT
CCGCATCCTTGTGCTGGACGAACTGCACCGATTTTCCAAGGCGCAACAGGACTTTTTCCTTCCCGTGCTGGAAAGCGGCG
AAGTCACACTGCTTGCCTCCACAACGGAAAATCCTTCTTTCAGCGTAACGCGGCAGCTGCTTTCCCGAATGCATGTTCTG
CGACTGAAACCGCTGGCCCACAGCGACCTGCTGACTCTGGCCCGCAGAGGAGCCGAGGCTCAAGGCGCTGCACTGAAAGA
CGATGTGTGCGAAATGCTTGCCACGGTGGCCCATGGCGATGCCCGCACACTGCTTAATCTGGTGGAGTATGTCGCCGGAC
TGCCCGAAGAAAAACAGACCCCCGAAGCCGTTAAAGCTGCTCTGCCAGAGCTGGTCATGCGTCATGACAAAGACGGCGAC
AGCCATTACGAAATTGCTTCAGCGCTCATCAAGTCCATCCGCGGAAGTGATCCCGACGCGGCTCTTTATTACCTTGCCTG
CCTGCTTGAAGGCGGAGAAGACCCGCGTTTTATCTGCCGGCGGCTCATTCTCTCCGCATCGGAAGACATAGGTCTTGCAG
ACCCGCAGGCTTTGCCGATGGCTGTATCCTGCCAGCAGGCAGTTGAATTTGTAGGCATGCCCGAAGGCTTTATTCCGCTG
GCGGAAACCGCCGTTTATCTGGCTCTGGCACCCAAAAGCAACAGCACATATGCAGCGTACCTCAATGCCTCGAAAGAGAT
ACGGCTGAACGGTCCCAAACCTGTGCCCATGCATCTGCGCAATCCTTCCTCCAAGCTCCAGAAAGACTGGGGCTACGGCA
AAGGGTATCTGTACCCGCACAACTATCCCGAAGGCTGGGTGGAACAGACATATCTGCCGGACGGATTGCAGGAGCGGGCT
TTTTACCACCCCAGAGAAAACGGCCATGAACAAAGGATGGCCGCGTGGTGGCGCCGTCTGCGCAGGCCCCGCCGTACAGG
AAAATAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:
NA

Sequences:

>Translated_428_residues
MPWAALLEQTTINRSIPLLHLTQPQQPLPEKIRPADLEGFVGQTHLRDRLRALMNASRLPSLLFFGPPGCGKSTIALLLA
RNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHVL
RLKPLAHSDLLTLARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPEEKQTPEAVKAALPELVMRHDKDGD
SHYEIASALIKSIRGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQALPMAVSCQQAVEFVGMPEGFIPL
AETAVYLALAPKSNSTYAAYLNASKEIRLNGPKPVPMHLRNPSSKLQKDWGYGKGYLYPHNYPEGWVEQTYLPDGLQERA
FYHPRENGHEQRMAAWWRRLRRPRRTGK
>Mature_427_residues
PWAALLEQTTINRSIPLLHLTQPQQPLPEKIRPADLEGFVGQTHLRDRLRALMNASRLPSLLFFGPPGCGKSTIALLLAR
NTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHVLR
LKPLAHSDLLTLARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPEEKQTPEAVKAALPELVMRHDKDGDS
HYEIASALIKSIRGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQALPMAVSCQQAVEFVGMPEGFIPLA
ETAVYLALAPKSNSTYAAYLNASKEIRLNGPKPVPMHLRNPSSKLQKDWGYGKGYLYPHNYPEGWVEQTYLPDGLQERAF
YHPRENGHEQRMAAWWRRLRRPRRTGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=39.3181818181818, Blast_Score=275, Evalue=6e-74,
Organism=Homo sapiens, GI18426904, Length=416, Percent_Identity=36.7788461538462, Blast_Score=231, Evalue=7e-61,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=38.8095238095238, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI1788167, Length=228, Percent_Identity=29.3859649122807, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17541988, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=36.150234741784, Blast_Score=254, Evalue=2e-68,
Organism=Saccharomyces cerevisiae, GI6324039, Length=265, Percent_Identity=24.9056603773585, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47658; Mature: 47527

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWAALLEQTTINRSIPLLHLTQPQQPLPEKIRPADLEGFVGQTHLRDRLRALMNASRLP
CCHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCC
SLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFSK
CEEEECCCCCCHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHCCEEEHHHHHHHHHHH
AQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHVLRLKPLAHSDLLTLARRGAEA
HHHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
QGAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPEEKQTPEAVKAALPELVMRHDKDGD
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
SHYEIASALIKSIRGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQALPM
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
AVSCQQAVEFVGMPEGFIPLAETAVYLALAPKSNSTYAAYLNASKEIRLNGPKPVPMHLR
HHHHHHHHHHHCCCCCCCHHHHHEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCEEEC
NPSSKLQKDWGYGKGYLYPHNYPEGWVEQTYLPDGLQERAFYHPRENGHEQRMAAWWRRL
CCHHHHHHHCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
RRPRRTGK
HCCCCCCC
>Mature Secondary Structure 
PWAALLEQTTINRSIPLLHLTQPQQPLPEKIRPADLEGFVGQTHLRDRLRALMNASRLP
CHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCC
SLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFSK
CEEEECCCCCCHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHCCEEEHHHHHHHHHHH
AQQDFFLPVLESGEVTLLASTTENPSFSVTRQLLSRMHVLRLKPLAHSDLLTLARRGAEA
HHHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
QGAALKDDVCEMLATVAHGDARTLLNLVEYVAGLPEEKQTPEAVKAALPELVMRHDKDGD
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
SHYEIASALIKSIRGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQALPM
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
AVSCQQAVEFVGMPEGFIPLAETAVYLALAPKSNSTYAAYLNASKEIRLNGPKPVPMHLR
HHHHHHHHHHHCCCCCCCHHHHHEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCEEEC
NPSSKLQKDWGYGKGYLYPHNYPEGWVEQTYLPDGLQERAFYHPRENGHEQRMAAWWRRL
CCHHHHHHHCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
RRPRRTGK
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]