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The map label for this gene is cph2 [H]

Identifier: 304570498

GI number: 304570498

Start: 2745881

End: 2746939

Strand: Reverse

Name: cph2 [H]

Synonym: NA

Alternate gene names: 304570498

Gene position: 2746939-2745881 (Counterclockwise)

Preceding gene: 45658123

Following gene: 45658120

Centisome position: 64.22

GC content: 37.11

Gene sequence:

>1059_bases
TTGATCAGTAAAGAAAACGATCCCTTGATGATAGAATATCTGGAAAAGAAAATCTATGATCAAAAACAATTATTAGAAAT
TAGTAAAGCTTTAAATTCCACATTAGATTATAAATATCTAATGGATGCGATTTTAAATATCTGTCTCGCTCAGCTTCAGA
CTCTACAGGCTGCGATCTATGTCAGTCCGGAAGTAGATTCCGATTTTTTTGAATTGGATCCGAGTTATAAAGGTTTTGAT
CTTTCCGAAAACGAGAAATCTTTTCGAATTAAAACAAACGCGGCTCTGATTCAATTTTTAGAAACTAGAATGAAAGCCAT
GACCATAAATCAAATCGAAGAGAATATGGGTAGGGCTGTAAATGAAGTAGATTTTTTGAGAGGAATTGGAGCTGATCTGA
TCATTCCATTGAATGCAAAAGGAAAAGTGAACGGACTTTTGGTTCTAGGAGAAAAGATGACCATGAACGAAGTCCAAGAA
GAGGATAGAGACTTTCTAACGACTCTTTCCACTCTTGCCGGAATCGCGGTGGAAAACTCAAGACTCTACGAACTCGCTAC
TGTAGATATGATGACTGGACTCAAAGTACATCATTACTTTCAGACAAAACTTAAAGAAGAAATGGATCGTTGCAGAAAGA
AAAAATCCTATCTTACTCTTCTATTCACAGACGTGGATAACTTTAAGAAGTTCAATGATACCCATGGACATCAGGCAGGA
GATCAGGTTTTGATCGAAGTGGCGAAACAATTGATTCGTCAAGCAGGGAAACATGATATTCCAGCTAGATATGGAGGCGA
GGAATTTTGTTTGGTAATGCCCGGTGCGGATTTGGAAAGAGGGTACGAAATGGGAGAAATGATTCGCAAAGCCGTAGAAT
CTAGTTCTGTGAAAAATCCAAACGGAGGTCCAGATTTAAAAGTTACTCTTTCGGTTGGTGTATCTGAGTTTTGGCCTAAG
GATAAAAATAACAGAGATTTGATTGAAAGAGCAGATAAGGCGCTTTATACAGCTAAAAATTCAGGTAAAAATCGTACTGT
TTGTTACAAAGAAAATTAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:
NA

Sequences:

>Translated_352_residues
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLQAAIYVSPEVDSDFFELDPSYKGFD
LSENEKSFRIKTNAALIQFLETRMKAMTINQIEENMGRAVNEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMNEVQE
EDRDFLTTLSTLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFKKFNDTHGHQAG
DQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIRKAVESSSVKNPNGGPDLKVTLSVGVSEFWPK
DKNNRDLIERADKALYTAKNSGKNRTVCYKEN
>Mature_352_residues
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLQAAIYVSPEVDSDFFELDPSYKGFD
LSENEKSFRIKTNAALIQFLETRMKAMTINQIEENMGRAVNEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMNEVQE
EDRDFLTTLSTLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFKKFNDTHGHQAG
DQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIRKAVESSSVKNPNGGPDLKVTLSVGVSEFWPK
DKNNRDLIERADKALYTAKNSGKNRTVCYKEN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.2272727272727, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=35.5828220858896, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=35.5029585798817, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=34.3558282208589, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=30.7262569832402, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=137, Percent_Identity=36.4963503649635, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87082007, Length=139, Percent_Identity=33.8129496402878, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=30.3571428571429, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=28.4023668639053, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=245, Percent_Identity=23.265306122449, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39982; Mature: 39982

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLQAAIY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
VSPEVDSDFFELDPSYKGFDLSENEKSFRIKTNAALIQFLETRMKAMTINQIEENMGRAV
ECCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMNEVQEEDRDFLTTLSTLAGIAVENS
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
RLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFKKFNDTHGHQAG
CEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCCCCCHH
DQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIRKAVESSSVKNP
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
NGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCYKEN
CCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEECC
>Mature Secondary Structure
MISKENDPLMIEYLEKKIYDQKQLLEISKALNSTLDYKYLMDAILNICLAQLQTLQAAIY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEE
VSPEVDSDFFELDPSYKGFDLSENEKSFRIKTNAALIQFLETRMKAMTINQIEENMGRAV
ECCCCCCCCEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEVDFLRGIGADLIIPLNAKGKVNGLLVLGEKMTMNEVQEEDRDFLTTLSTLAGIAVENS
HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
RLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFKKFNDTHGHQAG
CEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHCCCCCCCCHH
DQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIRKAVESSSVKNP
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
NGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCYKEN
CCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]