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The map label for this gene is ssb [H]

Identifier: 30410826

GI number: 30410826

Start: 581833

End: 582363

Strand: Reverse

Name: ssb [H]

Synonym: BUsg527

Alternate gene names: 30410826

Gene position: 582363-581833 (Counterclockwise)

Preceding gene: 21672796

Following gene: 21672789

Centisome position: 90.79

GC content: 28.44

Gene sequence:

>531_bases
ATGTACTTAATTTTTTTAAAGTTAGAAAATGGAGTTTTGATTATGGCAAGTAGAGGTGTAAATAAAGTAATATTAATTGG
TCATTTGGGTCAAGATCCTGAAGTTCGTTACATGCCGAACGGTAACGCAGTAGTAAATATGACACTTGCAACTTCAGAAA
ATTGGAAAGATAAAAATACTGGTGAAAACAAAGAGAAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTAGCCGAA
ATTGCTGGAGAATATTTAAGAAAAGGTTCTCAAGTTTATATTGAAGGATCTCTTCAAACTAGAAAATGGCAAGACCAAAA
TGGTCTTGAACGTTATACAACAGAAGTTATAGTTAACATTGGCGGTACGATGCAAATGTTAGGAAATCGTAATTCAAATT
CTCATAATGTCACATTAAATGAAAATAATAATATTGTAAAAACAAAAAAAATAGAAATAAATAATTCTCCTAAAAAAATA
GAAAAAATTGATTCTTCAGAAATAGATTTTGATGATGAAATTCCTTTTTAG

Upstream 100 bases:

>100_bases
CTTAATTATTTTAATATATCGTTTTTTATAATTTTGGTTATATTAAATTAGGTATTCATGATGTATTTGTATTACAAATA
ATTAAAAATTCTATTTAAAA

Downstream 100 bases:

>100_bases
AAAAATAAAATCCATGGCCCCAATTTTTTAGGGGCTATATATTTTTTTAAATCAAAGATTTTTTATAAATTTTAGTAAAA
TATGACAAAATTGTTCTTTA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MYLIFLKLENGVLIMASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAE
IAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKI
EKIDSSEIDFDDEIPF

Sequences:

>Translated_176_residues
MYLIFLKLENGVLIMASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAE
IAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKI
EKIDSSEIDFDDEIPF
>Mature_176_residues
MYLIFLKLENGVLIMASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAE
IAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKI
EKIDSSEIDFDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=117, Percent_Identity=34.1880341880342, Blast_Score=80, Evalue=8e-16,
Organism=Escherichia coli, GI1790494, Length=178, Percent_Identity=58.4269662921348, Blast_Score=210, Evalue=4e-56,
Organism=Drosophila melanogaster, GI85725234, Length=101, Percent_Identity=33.6633663366337, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24647376, Length=101, Percent_Identity=33.6633663366337, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 20040; Mature: 20040

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLIFLKLENGVLIMASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNT
CEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCC
GENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNI
CCCCCCCCEEEEEEEHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCHHHEEEEEEEEC
GGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKIEKIDSSEIDFDDEIPF
CCEEEEECCCCCCCCEEEECCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MYLIFLKLENGVLIMASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNT
CEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCC
GENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYIEGSLQTRKWQDQNGLERYTTEVIVNI
CCCCCCCCEEEEEEEHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCHHHEEEEEEEEC
GGTMQMLGNRNSNSHNVTLNENNNIVKTKKIEINNSPKKIEKIDSSEIDFDDEIPF
CCEEEEECCCCCCCCEEEECCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]