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The map label for this gene is yjfQ

Identifier: 30065562

GI number: 30065562

Start: 4514136

End: 4514891

Strand: Reverse

Name: yjfQ

Synonym: S4616

Alternate gene names: 30065562

Gene position: 4514891-4514136 (Counterclockwise)

Preceding gene: 30065563

Following gene: 161486367

Centisome position: 98.16

GC content: 50.79

Gene sequence:

>756_bases
ATGACTGAAGCACAAAGACATCAAATCCTCCTGGAAATGCTCGCACAATTGGGCTTTGTGACCGTTGAGAAAGTCGTTGA
GCGTCTGGGAATTTCGCCTGCCACTGCGCGACGCGATATCAATAAACTTGGCGAAAGCGGCAAACTGAAAAAGGTGCGCA
ATGGCGCAGAAGCTATTACCCAACAGCGCCCGCGCTGGACGCCGATGAATCTGCATCAGGCGCAGAATCACGATGAAAAA
GTACGTATTGCTAAAGCGGCCTCGCAGCTGGTTAATCCGGGCGAAAGCGTAGTCATCAACTGCGGCTCCACCGCGTTTCT
GCTTGGGCGGGAAATGTGTGGCAAGCCAGTGCAAATCATCACTAATTATCTACCGCTGGCAAATTACCTGATCGATCAAG
AACATGACAGCGTGATCATTATGGGTGGACAGTACAACAAAAGTCAGTCCATCACTTTAAGCCCGCAGGGCAGCGAAAAC
AGTCTCTATGCCGGGCACTGGATGTTTACCAGCGGAAAAGGGCTGACCGCAGAAGGGTTGTATAAAACCGATATGCTGAC
AGCAATGGCAGAGCAGAAGATGCTGAGCGTGGTAGGGAAACTGGTGGTACTGGTTGATAGCAGTAAGATTGGCGAACGCG
CGGGAATGCTTTTTAGCCGTGCCGATCAAATCGATATGCTGATCACCGGCAAAAATGCTAACCCGGAAATCCTGCAACAA
CTGGAAGCGCAAGGGGTCAGCATTCTGCGTGTTTAA

Upstream 100 bases:

>100_bases
TTTATACCGGATAGCGTGGAGAAGTTCGCGCTATCCGGCGTAGTATTTCCTGGCTATTTCAAATATCATCTAAAAAAATC
AAATTTTATCGGAATAGCTC

Downstream 100 bases:

>100_bases
AGATGCTGGCGGAAAAATGTCACGGCAGCATCTAACGCCTCAGGCGTAATGCGGTGACGCACGCCTGGCTGCCATGAACA
GGTTAGCAGTTTATCCCGTC

Product: transcriptional repressor UlaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK
VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ
LEAQGVSILRV

Sequences:

>Translated_251_residues
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK
VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ
LEAQGVSILRV
>Mature_250_residues
TEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKV
RIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENS
LYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQL
EAQGVSILRV

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=251, Percent_Identity=99.601593625498, Blast_Score=515, Evalue=1e-148,
Organism=Escherichia coli, GI1789059, Length=257, Percent_Identity=24.5136186770428, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789829, Length=254, Percent_Identity=24.0157480314961, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=24.7058823529412, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787540, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=23.6051502145923, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=23.9316239316239, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27544; Mature: 27413

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAIT
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII
HCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHH
TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGL
HHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ
HHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
LEAQGVSILRV
HHHCCEEEEEC
>Mature Secondary Structure 
TEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAIT
CCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII
HCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHH
TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGL
HHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ
HHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
LEAQGVSILRV
HHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA