| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yqeI [C]
Identifier: 30065235
GI number: 30065235
Start: 4172182
End: 4172946
Strand: Direct
Name: yqeI [C]
Synonym: S4837
Alternate gene names: 30065235
Gene position: 4172182-4172946 (Clockwise)
Preceding gene: 30065233
Following gene: 30065236
Centisome position: 90.71
GC content: 35.56
Gene sequence:
>765_bases ATGGAGCGGAGATGTTTTTTCATTATCAATGACGCGATTATTTTTGATCCGAACAAATGCTCGCTCTCGAATGTAAATAC CCAGGATGAGATAAATTTTCCAGCTACGGCGGGGTGTATTTTGGCAGTGTTACTGGAAAGTAATGGTGGAGCGGTTGACA GGAACTCAATCATTGATAGCGTTTTGGAGAGATTTTCATTTGATCTGTCAAACAACACATTGAACCAATATATATCCCTG TTACGCAAAAGTTTTAAAAATATTGGTGTTGAAGAAAATGTGATTCTTACGATACCCAAAGTAGGCTTTTACATCAGTGA AAACATAACAATAAGTAAACAATCTTATGATGATTCTCATTTACAAGAAGATGTTGTTGAAAAAGTAGAGCGCAAAAGGA GTATTCCTCTTTTTCGCATTTTGATTTCGCTTGTGGTAGTAATTGTTATTATTGAAATGTTTGCCGTGGCTTTTAAAGAT ACCTACAGTATAACGGATTATCCATTGGTTAAATCAGGTAAGATTGACACCTGTGATTTATATCTTTCAGAGAATCTTAA CGAGATTGGCCTCGCTAAATCTCAAATAGAGGCCGCTGAAATTTCGAAAAAGCATTTACCCTGTGTGCCAGGTGCAAATT TTATATATGATGTAAATAGTATGCATTATTTGCTTGGGGAAGGGCAGCGGTATTTATCAAGATGTATAAAATCCTCTAAT GACGAAACTTATGCAATTTGTTCAGAGGTGCTATTATATGACTAA
Upstream 100 bases:
>100_bases ATATGACTTTTTCAGGGTTATATTTGTATTTTAGTTTCTTGTGTCAGTTCCACCAGGAATAGGCTAAAATGACAAAATCT TATTTTGTGTTGTTGCCTGC
Downstream 100 bases:
>100_bases TAAGAAAATGTATTTTATATTAATACTTGTTTTCACATTGCTACAGGTGTGTTTTTTTGCTCTCTGGAAGGCTCGTGATG GTAGCACAACGTCTCTTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVLLESNGGAVDRNSIIDSVLERFSFDLSNNTLNQYISL LRKSFKNIGVEENVILTIPKVGFYISENITISKQSYDDSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKD TYSITDYPLVKSGKIDTCDLYLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDVNSMHYLLGEGQRYLSRCIKSSN DETYAICSEVLLYD
Sequences:
>Translated_254_residues MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVLLESNGGAVDRNSIIDSVLERFSFDLSNNTLNQYISL LRKSFKNIGVEENVILTIPKVGFYISENITISKQSYDDSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKD TYSITDYPLVKSGKIDTCDLYLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDVNSMHYLLGEGQRYLSRCIKSSN DETYAICSEVLLYD >Mature_254_residues MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVLLESNGGAVDRNSIIDSVLERFSFDLSNNTLNQYISL LRKSFKNIGVEENVILTIPKVGFYISENITISKQSYDDSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKD TYSITDYPLVKSGKIDTCDLYLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDVNSMHYLLGEGQRYLSRCIKSSN DETYAICSEVLLYD
Specific function: Unknown
COG id: COG3710
COG function: function code K; DNA-binding winged-HTH domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28635; Mature: 28635
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVLLESNGGAVDRNSIIDS CCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHH VLERFSFDLSNNTLNQYISLLRKSFKNIGVEENVILTIPKVGFYISENITISKQSYDDSH HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEECCCCCHHH LQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKDTYSITDYPLVKSGKIDTCDL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEE YLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDVNSMHYLLGEGQRYLSRCIKSSN HHHCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHCCC DETYAICSEVLLYD CCHHHHHHHHHHCC >Mature Secondary Structure MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVLLESNGGAVDRNSIIDS CCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHH VLERFSFDLSNNTLNQYISLLRKSFKNIGVEENVILTIPKVGFYISENITISKQSYDDSH HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEECCCCCHHH LQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKDTYSITDYPLVKSGKIDTCDL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEE YLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDVNSMHYLLGEGQRYLSRCIKSSN HHHCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHCCC DETYAICSEVLLYD CCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA