| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yihQ
Identifier: 30064833
GI number: 30064833
Start: 3691298
End: 3693334
Strand: Direct
Name: yihQ
Synonym: S3796
Alternate gene names: 30064833
Gene position: 3691298-3693334 (Clockwise)
Preceding gene: 30064832
Following gene: 30064834
Centisome position: 80.26
GC content: 53.22
Gene sequence:
>2037_bases ATGGATACGCCACGTCCACAGTTATTAGATTTTCAATTTCATCAGAATAACGACAGTTTTACCCTACATTTTCAACAACG TCTTATTTTAACCCATAACAAAGATAATCCTTGTTTATGGATTGGCTCAGGTATAGCGGATATCGATATGTTCCGCGGTA ATTTCAGCATTAAAGATAAACTACAGGAGAAAATTGCGCTTACCGACGCCATCGTCAGCCAGTCACCGGATGGTTGGTTA ATTCATTTCAGCCGTGGTTCTGACATTAGCGCCACGCTGAATATCTCTGCCGACGATCAGGGCCGTTTATTGCTGGAACT ACAAAACGACAACCTTAACCACAACCGTATCTGGCTGCGCCTTGCCGCTCAACCAGAGGACCATATCTACGGCTGCGGCG AACAGTTTTCCTACTTCGATCTGCGCGGCAAACCGTTCCCGCTATGGACCAGTGAACAAGGCGTTGGTCGCAACAAACAA ACCTATGTCACCTGGCAGGCCGACTGCAAAGAAAATGCGGGCGGCGACTATTACTGGACTTTCTTCCCACAGCCTACGTT TGTCAGCACGCAGAAGTATTACTGCCATGTTGATAACAGTTGCTACATGAACTTCGACTTTAGCGCCCCGGAATACCATG AACTGGCGCTGTGGGAAGACAAAGCTACGCTACGTTTTGAATGTGCTGACACATACATCTCCCTGCTGGAAAAATTAACT GCCCTGCTGGGACGCCAGCCAGAACTGCCCGACTGGATTTATGACGGGGTAACGCTCGGCATTCAGGGCGGGACGGAAGT GTGCCAGAAGAAACTGGACACCATGCGTAACGCGGGCGTGAAGGTTAACGGCATCTGGGCGCAGGACTGGTCTGGGATCC GTATAACCTCTTTTGGCAAGCGCGTGATGTGGAACTGGAAGTGGAACAGCGAAAACTACCCGCAACTGGATTCACGCATT AAGCAGTGGTATCAGGAGGGCGTGCAGTTCCTGGCCTATATCAACCCGTATGTTGCCAGCGATAAAGATCTCTGCGAAGA AGCGGCACAACACGGCTATCTAGCAAAAGATGCCTCTGGCGGTGACTATCTGGTGGAGTTTGGCGAGTTTTACGGCGGCG TTGTCGATCTCACTAATCCAGAAGCCTACGCCTGGTTCAAGGAAGTGATCAAAAAGAACATGATTGAACTCGGCTGCGGC GGCTGGATGGCTGACTTCGGCGAGTATCTGCCCACCGACACGTACCTGCATAACGGCGTCAGTGCCGAAATTATGCATAA CGCCTGGCCTGCGCTGTGGGCGAAGTGTAACTACGAAGCCCTTGAAGAAACGGGCAAGCTCGGCGAGATCCTCTTCTTTA TGCGCGCCGGTTCTACCGGTAGCCAGAAATACTCCACCATGATGTGGGCGGGCGACCAGAACGTGGACTGGAGTCTCGAC GATGGCCTGGCGTCCGTAGTCCCGGCGGCGCTGTCGCTGGCAATGACCGGACATGGTCTGCATCACAGCGACATTGGCGG TTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTGGTGCGATTTCAGCGCCTTCACGCCGATGA TGCGCACCCACGAAGGTAACCGTCCTGGCGACAACTGGCAGTTTGACGGCGATGCGGAAACTATCGCCCATTTTGCCCGT ATGACTACCGTTTTCACCACCCTGAAACCTTATCTGAAAGAGGCCGTCGCGCTGAATGCGAAGTCCGGTCTGCCGGTCAT GCGCCCGCTGTTCCTGCATTACGAAGACGATGCACATACCTATTCCCTGAAATATCAGTACCTGTTAGGCCGCGACATTC TGGTCGCTCCGGTACACGAAGAAGGTCGCAGCGACTGGACGCTCTATCTGCCGGAGGATAACTGGGTACATGCCTGGACG GGTGAAGCGTTCCGGGGCGGGGAAGTTACCGTTAATGCGCCCATCGGCAAGCCGCCGGTCTTTTATCGCGCCGATAGCGA ATGGGCGGCACTGTTCGCGTCGTTAAACAGCATCTAA
Upstream 100 bases:
>100_bases CTGTAAAGTTTTTATATATCAGTTTTATGAGAATCATTTTACATAAGCCTGTAATAACAGGAAGGCAACAATCTCGTTCT CAACTCTATGGAGATTAGTT
Downstream 100 bases:
>100_bases TCACATCCGCCCGTGGGGAAACTCATGGGCAAAGGGAGAACATCGATGAGTCACATCACAACGGAAGATCCAGCAACTTT ACGCCTGCCCTTTAAAGAGA
Product: alpha-glucosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 678; Mature: 678
Protein sequence:
>678_residues MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSGIADIDMFRGNFSIKDKLQEKIALTDAIVSQSPDGWL IHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLRLAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQ TYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRITSFGKRVMWNWKWNSENYPQLDSRI KQWYQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASGGDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCG GWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGNRPGDNWQFDGDAETIAHFAR MTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHTYSLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWT GEAFRGGEVTVNAPIGKPPVFYRADSEWAALFASLNSI
Sequences:
>Translated_678_residues MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSGIADIDMFRGNFSIKDKLQEKIALTDAIVSQSPDGWL IHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLRLAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQ TYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRITSFGKRVMWNWKWNSENYPQLDSRI KQWYQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASGGDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCG GWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGNRPGDNWQFDGDAETIAHFAR MTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHTYSLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWT GEAFRGGEVTVNAPIGKPPVFYRADSEWAALFASLNSI >Mature_678_residues MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSGIADIDMFRGNFSIKDKLQEKIALTDAIVSQSPDGWL IHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLRLAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQ TYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRITSFGKRVMWNWKWNSENYPQLDSRI KQWYQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASGGDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCG GWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGNRPGDNWQFDGDAETIAHFAR MTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHTYSLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWT GEAFRGGEVTVNAPIGKPPVFYRADSEWAALFASLNSI
Specific function: Exhibits hydrolysis activity against alpha-glucosyl fluoride, although natural substrates, such as alpha-glucobioses are scarcely hydrolyzed [H]
COG id: COG1501
COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 31 family [H]
Homologues:
Organism=Homo sapiens, GI153791946, Length=349, Percent_Identity=24.6418338108883, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI88900491, Length=351, Percent_Identity=25.9259259259259, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI38202257, Length=351, Percent_Identity=25.9259259259259, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI66346737, Length=389, Percent_Identity=26.2210796915167, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI119393895, Length=371, Percent_Identity=23.1805929919137, Blast_Score=87, Evalue=7e-17, Organism=Homo sapiens, GI119393893, Length=371, Percent_Identity=23.1805929919137, Blast_Score=87, Evalue=7e-17, Organism=Homo sapiens, GI119393891, Length=371, Percent_Identity=23.1805929919137, Blast_Score=87, Evalue=7e-17, Organism=Homo sapiens, GI221316699, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI310115361, Length=236, Percent_Identity=28.8135593220339, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI2367323, Length=678, Percent_Identity=99.2625368731563, Blast_Score=1410, Evalue=0.0, Organism=Escherichia coli, GI2367256, Length=550, Percent_Identity=24.5454545454545, Blast_Score=175, Evalue=8e-45, Organism=Caenorhabditis elegans, GI17560798, Length=380, Percent_Identity=22.6315789473684, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560800, Length=380, Percent_Identity=22.6315789473684, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71991189, Length=366, Percent_Identity=24.5901639344262, Blast_Score=96, Evalue=7e-20, Organism=Caenorhabditis elegans, GI32563849, Length=231, Percent_Identity=30.7359307359307, Blast_Score=82, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71985706, Length=237, Percent_Identity=29.1139240506329, Blast_Score=81, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319706, Length=381, Percent_Identity=22.0472440944882, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24650054, Length=345, Percent_Identity=25.7971014492754, Blast_Score=102, Evalue=1e-21, Organism=Drosophila melanogaster, GI24643749, Length=348, Percent_Identity=23.5632183908046, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24643753, Length=348, Percent_Identity=23.5632183908046, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24643751, Length=348, Percent_Identity=23.5632183908046, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24643746, Length=348, Percent_Identity=23.5632183908046, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI21357605, Length=348, Percent_Identity=23.5632183908046, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI28571440, Length=379, Percent_Identity=20.5804749340369, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571438, Length=380, Percent_Identity=21.5789473684211, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR000322 - InterPro: IPR017853 [H]
Pfam domain/function: PF01055 Glyco_hydro_31 [H]
EC number: =3.2.1.20 [H]
Molecular weight: Translated: 77305; Mature: 77305
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSGIADIDMFRGNFSIKDK CCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCHHHH LQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLR HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEE LAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWT EECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE FFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ECCCCCEEECCEEEEEECCEEEEEECCCCCCCEEEEEEECCCEEEEEEHHHHHHHHHHHH ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRITSFGK HHHCCCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCC RVMWNWKWNSENYPQLDSRIKQWYQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASG EEEEEEEECCCCCCHHHHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHHHCCCEEECCCC GDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV CHHEEEEHHHCCCEEECCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHCCCCHHHHCCC SAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD CHHHHHCCCHHHHHCCCHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCC DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGN CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCCCC RPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHT CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCEE YSLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPV EEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCE FYRADSEWAALFASLNSI EEECCCHHHHHHHHHHCC >Mature Secondary Structure MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSGIADIDMFRGNFSIKDK CCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCHHHH LQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGRLLLELQNDNLNHNRIWLR HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEE LAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQTYVTWQADCKENAGGDYYWT EECCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE FFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALWEDKATLRFECADTYISLLEKLT ECCCCCEEECCEEEEEECCEEEEEECCCCCCCEEEEEEECCCEEEEEEHHHHHHHHHHHH ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRITSFGK HHHCCCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCC RVMWNWKWNSENYPQLDSRIKQWYQEGVQFLAYINPYVASDKDLCEEAAQHGYLAKDASG EEEEEEEECCCCCCHHHHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHHHCCCEEECCCC GDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV CHHEEEEHHHCCCEEECCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHCCCCHHHHCCC SAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGSTGSQKYSTMMWAGDQNVDWSLD CHHHHHCCCHHHHHCCCHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCC DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFEMKRSKELLLRWCDFSAFTPMMRTHEGN CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCCCC RPGDNWQFDGDAETIAHFARMTTVFTTLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHT CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCEE YSLKYQYLLGRDILVAPVHEEGRSDWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPV EEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCE FYRADSEWAALFASLNSI EEECCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503 [H]