Click here to switch to the map view.

The map label for this gene is yjbF

Identifier: 30064618

GI number: 30064618

Start: 3418172

End: 3418840

Strand: Direct

Name: yjbF

Synonym: S3553

Alternate gene names: 30064618

Gene position: 3418172-3418840 (Clockwise)

Preceding gene: 30064617

Following gene: 30064619

Centisome position: 74.32

GC content: 54.41

Gene sequence:

>669_bases
GTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGCTATTACAGGCCTGTTC
AGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGTACAGCTGACGGACGATGATA
TTCAAAATATGCCCTACGCCAGCCAGTACATGCAGCTTAATGGCGGGCCGCAATTGTTTGTGGTGCTGGCCTTCGCTGAA
GACGGACAACAAAAATGGGTCACTCAGGATCAAGCCACTCTTGTCACACAACATGGTCGTCTGGTGAAGACTTTGCTTGG
CGGCGACAACCTGATTGAAGTGAATAACCTTGCCGCCGACCCGCTGATTAAACCCGCACAAATTGTTGATGGTGCAACAT
GGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACC
GATACCGTCAAGGTCGGCAGCGATGAAACCCTGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCA
TAACCGCTACTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTCCCGGTGAAAA
CCACTCTCATCAAGGCGGCAAAACAATGA

Upstream 100 bases:

>100_bases
CCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTTGAGTCATTGCATCTGTGGCTTGAAGTATGAAGGGATT
TACCATAACCACACTCCGGT

Downstream 100 bases:

>100_bases
TTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGC
AATGGCAGCAGTGAGGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAE
DGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGT
DTVKVGSDETLVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ

Sequences:

>Translated_222_residues
MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAE
DGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGT
DTVKVGSDETLVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
>Mature_222_residues
MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAE
DGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGT
DTVKVGSDETLVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcC [H]

Homologues:

Organism=Escherichia coli, GI87082360, Length=212, Percent_Identity=98.5849056603774, Blast_Score=430, Evalue=1e-122,
Organism=Escherichia coli, GI1787221, Length=212, Percent_Identity=39.1509433962264, Blast_Score=163, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 25018; Mature: 25018

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYA
CEEHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCHHHCCCCH
SQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAAD
HHHEEECCCCEEEEEEEECCCCCHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCCCC
PLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETLVRVLDEEVS
CCCCCHHHHCCCCHHCCCCCHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHHHHHC
TDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
HHHHHHCCCEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDIQNMPYA
CEEHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCHHHCCCCH
SQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAAD
HHHEEECCCCEEEEEEEECCCCCHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCCCC
PLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDETLVRVLDEEVS
CCCCCHHHHCCCCHHCCCCCHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHHHHHC
TDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
HHHHHHCCCEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]