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The map label for this gene is yqhC

Identifier: 30064364

GI number: 30064364

Start: 3138366

End: 3139493

Strand: Reverse

Name: yqhC

Synonym: S3259

Alternate gene names: 30064364

Gene position: 3139493-3138366 (Counterclockwise)

Preceding gene: 30064369

Following gene: 30064361

Centisome position: 68.26

GC content: 50.09

Gene sequence:

>1128_bases
ATGCGGGTTGGGGTGTGCAGATTAAAGTTGTTCATTACTTGCTCCCTTTGCTGGGCCAATATGAGGGCAGAGAACGATCT
GCCTGATGTTTTTCATTGTGATCGCCAGCGCCCTGGCTCTCAATGCTCATTTCTGCCAATGTCTTGCCTATTTCTCCAGA
GTGCTGGAGAAATGCTACAAAATTGCGCACAATCAAATTGCCGCATTATTCCTAAGAAATTACGCGATATGAAACGTGAA
GAGATTTGTCGCTTGCTGGCGGATAAAGTTAATAAACTGAAAAATAAAGAAAATAGTTTGTCAGAACTGTTGCCCGATGT
GCGTTTGTTGTATGGCGAGACGCCTTTCGCACGTACACCGGTGATGTACGAGCCTGGCATCATAATTCTCTTTTCCGGGC
ATAAAATCGGTTATATCAATGAACGCGTGTTTCGTTATGATGCCAATGAATACCTGCTGCTGACGGTGCCGTTGCCGTTT
GAGTGCGAAACCTATGCCACGTCAGAGGTGCCGCTGGCAGGGTTGCGTCTCAATGTCGATATTTTGCAGTTACAGGAACT
GTTGATGGACATTGGCGAAGATGAGCATTTCCAGCCGTCGATGGCAGCCAGCGGGATTAACTCCGCCACGTTATCAGAAG
AGATTTTATGCGCGGCGGAGCGGTTACTCGACGTGATGGAGCGACCACTGGATGCGCGTATTCTCGGCAAACAGATCATC
CGCGAAATTCTGTACTACGTGCTGACCGGACCTTGCGGCGGCGCGTTACTGGCGCTGGTCAGTCGCCAGACTCACTTCAG
TCTGATTAGCCGCGTGCTGAAACGAATTGAGAATAAATACACCGAAAACCTGAGCGTCGAGCAACTGGCGGCAGAAGCCA
ACATGAGCGTATCGGCGTTCCACCATAATTTTAAGTCTGTCACCAGCACCTCGCCGTTGCAGTATTTGAAGAATTACCGT
CTGCATAAGGCGCGGATGATGATCATCCATGACGGCATGAAGGCCAGCGCAGCAGCGATGCGCGTCGGCTATGAAAGCGC
ATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGGGAAGATGCGGCAAGAATGCGGGCGATGCAGG
GGAATTAA

Upstream 100 bases:

>100_bases
GCCGGTTTTTTTCACGCTGCCGCCACCGTAGGTAATCAATACGCGAGCATCGTGAGGAATTTGTTCGCGTAAACCAGCGA
TTGCGCCTTTACCAAACAGA

Downstream 100 bases:

>100_bases
ATACGTTCCCGGTACAGCAGCCGGGAACGGGGAAAATCGTCAGGCGTTACAGTATTTTTTTTTAATCACCACAAACAGCG
TGCCTAACAAGCCAGCGGTT

Product: putative ARAC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCLFLQSAGEMLQNCAQSNCRIIPKKLRDMKRE
EICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPF
ECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQII
REILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYR
LHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Sequences:

>Translated_375_residues
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCLFLQSAGEMLQNCAQSNCRIIPKKLRDMKRE
EICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPF
ECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQII
REILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYR
LHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
>Mature_375_residues
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCLFLQSAGEMLQNCAQSNCRIIPKKLRDMKRE
EICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPF
ECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQII
REILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYR
LHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=318, Percent_Identity=99.685534591195, Blast_Score=652, Evalue=0.0,
Organism=Escherichia coli, GI1786496, Length=88, Percent_Identity=39.7727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42494; Mature: 42494

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCLFLQSAGEMLQ
CCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
HHHHCCCEEECHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCC
VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVD
CEECCCEEEEECCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHH
ILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQII
HHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
REILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGV
HHHHHHHCCCCHHHHHHHCCHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCC
TPGEDAARMRAMQGN
CCCCHHHHHHHCCCC
>Mature Secondary Structure
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCLFLQSAGEMLQ
CCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
HHHHCCCEEECHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCC
VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVD
CEECCCEEEEECCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHH
ILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQII
HHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
REILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGV
HHHHHHHCCCCHHHHHHHCCHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCC
TPGEDAARMRAMQGN
CCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]