Definition Shigella flexneri 2a str. 2457T, complete genome.
Accession NC_004741
Length 4,599,354

Click here to switch to the map view.

The map label for this gene is yfgD [H]

Identifier: 30063869

GI number: 30063869

Start: 2583901

End: 2584260

Strand: Direct

Name: yfgD [H]

Synonym: S2688

Alternate gene names: 30063869

Gene position: 2583901-2584260 (Clockwise)

Preceding gene: 30063868

Following gene: 30063873

Centisome position: 56.18

GC content: 52.22

Gene sequence:

>360_bases
ATGACCAAACAGGTAAAAATCTACCATAACCCACGCTGTTCAAAGAGCCGGGAAACGCTGAACCTGCTGAAAGAAAACGG
CGTGGAGCCAGAAGTGGTGCTCTACCTTGAGACACCCGCCGATGCGGCAACGCTGCGCGATTTGCTGAAAATGCTGGGGA
TGAATAGCGCCCGTGAATTGATGCGCCAGAAAGAGGATCTTTATAAAGAACTAAACCTGGCTGACAGTTCGCTTAGCGAA
GAGGCGCTGATTCAGGCAATGGTGGATAATCCGAAGCTGATGGAGCGCCCGATTATGGTCGCGAATGGCAAAGCGCGGAT
TGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAA

Upstream 100 bases:

>100_bases
TGCAACAAGCGCGTTACGATGCGCGCATCGACCAGTTGCGCCAGCTGCAGGAACGCTTTAAGCCTTATACCAAGATGTAA
TTCGCATTAAAGGAAGAACA

Downstream 100 bases:

>100_bases
GATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGAT
TAACTTCGCGTAGGTCAGGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSE
EALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG

Sequences:

>Translated_119_residues
MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSE
EALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG
>Mature_118_residues
TKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEE
ALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG

Specific function: Unknown

COG id: COG1393

COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ArsC family [H]

Homologues:

Organism=Escherichia coli, GI1788841, Length=119, Percent_Identity=98.3193277310924, Blast_Score=237, Evalue=2e-64,
Organism=Escherichia coli, GI1789918, Length=115, Percent_Identity=40.8695652173913, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006659
- InterPro:   IPR006660
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF03960 ArsC [H]

EC number: NA

Molecular weight: Translated: 13449; Mature: 13318

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSAREL
CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH
MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
TKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAATLRDLLKMLGMNSAREL
CCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH
MRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIMVANGKARIGRPPEQVLEIVG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCEEEECCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 10493123 [H]