| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is 30063432
Identifier: 30063432
GI number: 30063432
Start: 2040864
End: 2041709
Strand: Direct
Name: 30063432
Synonym: S2146
Alternate gene names: NA
Gene position: 2040864-2041709 (Clockwise)
Preceding gene: 30063431
Following gene: 30063433
Centisome position: 44.37
GC content: 43.97
Gene sequence:
>846_bases ATGACATTCGGTCGCTTGTGGGAAAAATTCCTCGCCAGCGCCTATTACAGTGACCTCAGTCCAAGAACACAAAAAGATTA TCTGCAACATCAAAAAAAGTTGCTTGCCGTATTCGGTAAGGTGCCGGCAGATTCCATAAAACCAGAACACATCCGTCGAT ACATGGACAAGAGAGGGGAACAGAGTAAAACGCAAGCCAACCATGAAAAAAGCAGTATGTCCCGCGTTTACAGTTGGGGG TATGAGCGAGGGTACGTGAAGGCTAACCCATGTGCAGGTGTAAGTAAATTCAAGGCCAAAAACCGCGAACGATATGTAAC CGACAAAGAATACCAGGCAGTATTAAGCGTTGCACCTCTTCCTGTTTTTATCGCAATGGAAATTGCCTATCTGTGTGCAG CGAGGGTTTCCGATGTGTTATCGCTGAAATGGGAGCAGATTGGAAACGACGGGATCTTTATCCAGCAAGGGAAAACAGGA AAAAAACAGATAAAAGCATGGAGTCCACGATTACAGGCGGCGATCGAAAAAGCAAAACAGTTACCAACATCCGCCTATGT AATCAGCAATCAATACGGCAACCGATATATGTACAAAGGCTTTAACGAAATGTGGGTAGAAGCAAGAAATCGCGCAGGCA AAATTTCAGGTATTTTAACCGACTTCACCTTTCATGATCTGAAGGCGAAAGGAATTTCAGACTATGAAGGAAGCAGTCGG GATAAGCAACTTTTCTCTGGTCACAAAACCGAGGGGCAAGTGCTAATCTATGACAGGAAGGTTAAAGTTTCACCGACACT TGATGTCCCGTTACCTGAAAATATTCCAAGAAAATATTCCAAGTAA
Upstream 100 bases:
>100_bases ACCAACATCCAGAGAATCTGTAACACTAACCGCCATCAAGGATGGTTTAGCTGCTTTATGGAAAAAGTATGAGGAAACTG TAAATAATCGCGATCGTGCA
Downstream 100 bases:
>100_bases TTCCAAGTGTGATTTTTGTCACTGACTTAATGATGTATAAGTGATTGAATTTTGGCGGAGAGAGGGGGATTTGAACCCCC GGTGGAGTTGCCCCCACTCC
Product: putative integrase for prophage CP-933U
Products: NA
Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Integrase; Phage-Related Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Integrase Protein; Site-Specific Recombinase; Prophage; Integrase/Recombinase; Integrase Prophage; Phage IntegrasePhage Integrase N-Terminal SAM-Like
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWG YERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG KKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSR DKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
Sequences:
>Translated_281_residues MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWG YERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG KKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSR DKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK >Mature_280_residues TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGY ERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGK KQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRD KQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32187; Mature: 32056
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGE CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC QSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPL HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCH PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHH LPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSR CCCCEEEEECCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH DKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK HHHHHCCCCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGE CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC QSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPL HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCH PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHH LPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSR CCCCEEEEECCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH DKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK HHHHHCCCCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA