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The map label for this gene is ydcV [H]

Identifier: 30063246

GI number: 30063246

Start: 1849313

End: 1850107

Strand: Reverse

Name: ydcV [H]

Synonym: S1906

Alternate gene names: 30063246

Gene position: 1850107-1849313 (Counterclockwise)

Preceding gene: 30063249

Following gene: 30063245

Centisome position: 40.23

GC content: 54.34

Gene sequence:

>795_bases
ATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGAT
AATCGCCGCCTATGCGTTTAACACTGAAGATGCGGCGTTTAGTTTTCCACCGCAGGGCCTGACGCTGCGCTGGTTTAGCG
TGGCAGCACAGCGTAGTGATATTCTTGATGCCGTGACGCTGTCACTTAAAGTGGCGGCGCTGGCGACATTAATTGCGCTG
GTGTTAGGGACGCTGGCAGCTGCCGCGCTGTGGAGACGAGACTTTTTCGGCAAAAACGCCATTTCGCTGTTATTGCTGCT
GCCCATTGCGCTGCCGGGCATTGTCACTGGTCTGGCGCTATTAACCGCCTTTAAAACCATCAATCTGGAGCCGGGATTTT
TCACCATCGTGGTCGGTCATGCGACTTTTTGCGTAGTGGTGGTGTTTAACAATGTCATCGCCCGTTTTCGCCGCACCTCG
TGGAGTCTGGTTGAGGCGTCAATGGATCTTGGGGCCAATGGCTGGCAAACCTTCCGCTACGTAGTGTTGCCGAATCTCAG
TTCGGCGTTACTGGCAGGAGGAATGCTGGCGTTTGCCTTGTCGTTCGATGAAATCATCGTTACGACCTTTACGGCAGGTC
ATGAACGAACGTTACCGTTGTGGTTGCTCAATCAGCTTGGGCGACCGCGTGATGTACCGGTAACCAACGTGGTGGCACTG
CTGGTTATGTTGGTAACAACCTTGCCGAACCTGGGGGCCTGGTGGCTAACCCGCGAAGGCGACAATGGTCAATAA

Upstream 100 bases:

>100_bases
GGGGCGATTGGCAATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGT
GAAACGTCTGGGAGCGTTCG

Downstream 100 bases:

>100_bases
CCACTGATACAGGAATAAGCTATGCAACATAAGTTACTGATTAACGGAGAACGGGTTAGCGGCGAAGGGGAAAAACAGCC
TGTCTATAATCCGGCAACGG

Product: putative transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPNLGAWWLTREGDNGQ

Sequences:

>Translated_264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPNLGAWWLTREGDNGQ
>Mature_264_residues
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIAL
VLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS
WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTLPNLGAWWLTREGDNGQ

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=264, Percent_Identity=99.6212121212121, Blast_Score=516, Evalue=1e-148,
Organism=Escherichia coli, GI1787368, Length=221, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=31.25, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787080, Length=212, Percent_Identity=28.3018867924528, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28723; Mature: 28723

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPNLGAWWLTREGDNGQ
HHHHHHHCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPPQGLTLRWFSVAAQRSD
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHH
ILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTSWSLVEASMDLGANGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEE
VVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTLPNLGAWWLTREGDNGQ
HHHHHHHCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]