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The map label for this gene is ymcD

Identifier: 30062524

GI number: 30062524

Start: 1041307

End: 1041630

Strand: Reverse

Name: ymcD

Synonym: S1056

Alternate gene names: 30062524

Gene position: 1041630-1041307 (Counterclockwise)

Preceding gene: 30062525

Following gene: 30062523

Centisome position: 22.65

GC content: 55.86

Gene sequence:

>324_bases
ATGAATAAAGGAAAAGTTATGAAACACAAGCTTTCTGCAATCCTTATGGCCTTCATGTTGACGACGCCAGCTGCGTTTGC
TGCCCCTGAAGCAGCAAACGGGACCGAGGCAACGACGGGTACTACTGGCACCACAACGACCACTACAGGTGCAACCACGA
CTGCGGCTACCACTAGTGGCGTGGCTGCTGGCGCTGTCGGCACGGCGACAGTTGTCGGTGTGGCAACGGCTGTTGGTGTG
GCGACGTTGGCAGTAGTTGCAGCAAATGACAGTGGCGATGGCGGTTCTCATAACACCTCAACCACCACGTCCACTACGCG
CTAA

Upstream 100 bases:

>100_bases
GCAGTATATAGTGCTAGCGGTATGAGGAAAGGGAGATTTCACAAGGATGTTATACTCAAAGTAGACAATCCTGATCTCAA
GCGTACGTATTGTCCATGCG

Downstream 100 bases:

>100_bases
TTCTGCTTAAACGCGTCGAAATTCAAGTTAAATAATACCCGGTTGCGATATTCGTACCGGGCTTTAGAGATTTGCATTTT
TTTAATTAACCTTTCAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein A homolog [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGTTTTTTGATTTAATTSGVAAGAVGTATVVGVATAVGV
ATLAVVAANDSGDGGSHNTSTTTSTTR

Sequences:

>Translated_107_residues
MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGTTTTTTGATTTAATTSGVAAGAVGTATVVGVATAVGV
ATLAVVAANDSGDGGSHNTSTTTSTTR
>Mature_107_residues
MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGTTTTTTGATTTAATTSGVAAGAVGTATVVGVATAVGV
ATLAVVAANDSGDGGSHNTSTTTSTTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein. Note=When the protein is overexpressed [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081813, Length=101, Percent_Identity=97.029702970297, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10135; Mature: 10135

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGTTTTTTGATTTAATTSG
CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
VAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR
CCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGTTTTTTGATTTAATTSG
CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
VAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR
CCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]