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The map label for this gene is arrD [H]

Identifier: 30062423

GI number: 30062423

Start: 927343

End: 927771

Strand: Direct

Name: arrD [H]

Synonym: S0944

Alternate gene names: 30062423

Gene position: 927343-927771 (Clockwise)

Preceding gene: 30062418

Following gene: 30062424

Centisome position: 20.16

GC content: 46.62

Gene sequence:

>429_bases
ATGTCGCCATCATTACGCAAGGCTGTTGCAGTTGCTATTGGTGGCGGGGCTGTTGCTATAGCATCTGTGTTAATCACTGG
CCCAGGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATCATTGGTGTATGGACTGTATGTCACG
GACACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCTCTCCTGAATAAAGACCTTGTC
ACTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGGTAAGCGCCCCATCAGCGACGTCTTG
TGAAAATTGTCCTGTCTGGCAACAATCGCGCCCATCTATATTGATGGACACGAACGATGAATTCCCAGACAACAAAAGAT
ATTCCCTGCTTCCGTTCTTATTTGCCTGA

Upstream 100 bases:

>100_bases
TTGGTGTGCTGGGAAGTCTGCTTCTGGGGCTTCTGACTTATCTGACGAATCTGTATTTCAAAATAAGAGAAGATAAGCGT
AAGGCTGCGAGAGGTGAATA

Downstream 100 bases:

>100_bases
TGCCCTGCGTTTAAGATTTGAAGATAAACTGACCATCCGGGCCATCGCTCAGCGTCTGGGTCTCAGTCATTCCACAATAC
ATACGCTTTTTCAGCGATTT

Product: putative lysozyme protein R of prophage CP-933K

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLV
TVARQINPYIKVDIPETTVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA

Sequences:

>Translated_142_residues
MSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLV
TVARQINPYIKVDIPETTVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA
>Mature_141_residues
SPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLVT
VARQINPYIKVDIPETTVSAPSATSCENCPVWQQSRPSILMDTNDEFPDNKRYSLLPFLFA

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=101, Percent_Identity=90.0990099009901, Blast_Score=164, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 15197; Mature: 15065

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDI
CCCCCCEEEEEEECCCHHEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCC
MPGKTYTEAECKALLNKDLVTVARQINPYIKVDIPETTVSAPSATSCENCPVWQQSRPSI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
LMDTNDEFPDNKRYSLLPFLFA
EEECCCCCCCCCCEEECCEECC
>Mature Secondary Structure 
SPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDI
CCCCCEEEEEEECCCHHEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCC
MPGKTYTEAECKALLNKDLVTVARQINPYIKVDIPETTVSAPSATSCENCPVWQQSRPSI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
LMDTNDEFPDNKRYSLLPFLFA
EEECCCCCCCCCCEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]