Click here to switch to the map view.

The map label for this gene is ybhC

Identifier: 30062419

GI number: 30062419

Start: 923594

End: 924877

Strand: Reverse

Name: ybhC

Synonym: S0940

Alternate gene names: 30062419

Gene position: 924877-923594 (Counterclockwise)

Preceding gene: 30062420

Following gene: 30062414

Centisome position: 20.11

GC content: 53.19

Gene sequence:

>1284_bases
GTGAACACATTTTCAGTTTCCCGTCTGGCGCTGGCATTGGCTTTTGGCGTGACGCTGACCGCCTGTAGCTCAACACCACC
CGATCAACGTCCTTCTGATCAAACTGCGCCTGGTACCTCTTCTCGCCCGATTCTGTCGGCAAAAGAAGCGCTGAATTTCG
ATGCGCAACACTATTTTGCATCCCTGACACCAGGTGCTGCAGCGTGGAATCCGTCCCCGATAACCCTGCCTGCGCAACCT
GACTTTGTTGTCGGCCCGGCGGGTACTCAAGGTGTAACGCATACCACGATTCAGGCGGCGGTAGATGCGGCAATTATCAA
GCGCACCAACAAGCGCCAGTATATTGCCGTGATGCCTGGTGAGTATCAGGGAACGGTGTATGTCCCTGCTGCTCCAGGTG
GAATCACTCTGTACGGTACAGGTGAAAAACCGATTGATGTGAAGATTGGGCTTTCCCTTGATGGGGGCATGAGCCCTGCC
GACTGGCGTCACGACGTCAACCCGCGCGGCAAATATATGCCAGGTAAACCAGCGTGGTATATGTACGATAGCTGCCAGAG
CAAACGCAGCGACAGTATCGGTGTTCTGTGTTCTGCGGTCTTCTGGTCACAAAACAATGGACTGCAACTGCAAAATCTGA
CCATCGAAAACACGCTGGGCGATAGCGTAGATGCAGGTAACCATCCGGCGGTAGCACTGCGTACTGACGGTGACCAAGTA
CAGATTAACAACGTTAACATTCTCGGTCGTCAGAACACCTTCTTTGTCACCAACAGCGGTGTGCAGAACCGTCTGGAAAC
CAACCGTCAGCCGCGTACGCTGGTGACCAACAGCTATATTGAAGGGGATGTGGATATCGTTTCTGGTCGCGGCGCAGTGG
TGTTCGATAACACCGAATTCCGCGTGGTGAACTCACGTACCCAGCAAGAAGCATATGTGTTTGCACCGGCTACGCTGTCT
AACATCTATTACGGTTTCCTCGCCGTAAACAGCCGTTTCAATGCTTCCGGTGATGGCGTGGCGCAACTGGGCCGCTCGCT
GGATGTTGATGCTAATACCAACGGTCAGGTGGTGATCCGTGATAGCGCCATCAACGAAGGTTTTAACACGGCTAAACCGT
GGGCCGATGCGGTGATCTCTAATCGTCCGTTTGCGGGTAATACCGGCAGCGTAGATGATAACGACGAAATACAGCGCAAT
CTGAATGACACTAACTACAACCGCATGTGGGAATACAATAACCGCGGCGTGGGCAGCAAAGTGGTTGCAGAGGAGAAGAA
GTAA

Upstream 100 bases:

>100_bases
GCAACAAATTGATAAGCAATGCTTTTTTATAATGCCAACTTAGTATAAAAAAGCAGGCTTCAACGGATTCATTTTTCTAT
TTCATAGCCCGGAGCAACCT

Downstream 100 bases:

>100_bases
GAGCTATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGA
TGCGCCAGCATCGCATCCGA

Product: putative pectinesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQP
DFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLS
NIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRN
LNDTNYNRMWEYNNRGVGSKVVAEEKK

Sequences:

>Translated_427_residues
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQP
DFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLS
NIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRN
LNDTNYNRMWEYNNRGVGSKVVAEEKK
>Mature_427_residues
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQP
DFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLS
NIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRN
LNDTNYNRMWEYNNRGVGSKVVAEEKK

Specific function: Putative thioesterase. Does not bind pectin, and has no pectinesterase activity [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786989, Length=427, Percent_Identity=99.2974238875878, Blast_Score=869, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: NA

Molecular weight: Translated: 46066; Mature: 46066

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS00800 PECTINESTERASE_1 ; PS00503 PECTINESTERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFA
CCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCHHHHEE
SLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPG
ECCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
EYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
MYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
EECCHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEEECCCEEEECCCEE
RVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEECCCCCCCEEEECCHHHHHEEEEEEEECCCCCCCCCHHHHHCCEEECCCCCCCEEEEE
DSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
ECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCC
VVAEEKK
CCCCCCC
>Mature Secondary Structure
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFA
CCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCHHHHEE
SLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPG
ECCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
EYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
MYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQV
EECCHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEEECCCEEEECCCEE
RVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEECCCCCCCEEEECCHHHHHEEEEEEEECCCCCCCCCHHHHHCCEEECCCCCCCEEEEE
DSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSK
ECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCC
VVAEEKK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 8905232; 331474; 7567469; 10806384 [H]