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The map label for this gene is rhsD

Identifier: 30061836

GI number: 30061836

Start: 285811

End: 288099

Strand: Direct

Name: rhsD

Synonym: S0288

Alternate gene names: 30061836

Gene position: 285811-288099 (Clockwise)

Preceding gene: 30061835

Following gene: 30061837

Centisome position: 6.21

GC content: 59.5

Gene sequence:

>2289_bases
GTGATTGAGGACGGCTCCCCCAATGTCTTTCTCGGCGGCGGTACGCAGACGGTACTGGAAATCAGCCCGGAAATCCCTGA
CTGGCTGCGTCAGGTGGTGGATGTGCTGTATGTGGTCGCCGGAATGCTTGGCGGGCTGGCTGGCGCCTGGCGTCAGGCGG
CAAAGATGGGGTCGAAATTTGGTACAAAATGTGCGGCAAAATTTATTGGTGGCGAAATGGTCGGGATGGCCATCTCTGAC
ACAGTCATGGGATTGTTCAGCAATCCGGTAGATGTCACCACTGGGCAAAAAATTTTGCTGCCGGAGACGGATTTTACCCT
GCCAGGACGCCTGCCTGTCACCTGTTCGCGCTTTTACGCCAGCCACCTGGAAACTGAAGGATTGCTGGGCAGAGGATGGC
GGCTGAACTGGGAGATAAACCTGCGTGAGGATGAAACATATATCACCTTCATCGGTGTACAGGGTCGGGAACTGAGTTAT
CCGAAAGAGATGCTGATACCGGGCCACCAGATATTCGACCCGGAAGAGCAGTTTTACCTGAGCCGTCTGCATGACGGATG
CTATGTGCTGCATTACACCGACTGCAGCTATTACGTGTTTGATGAATTTGATGACCACGGCGTCGCGCCGTTACTTTTTA
TGGAGACGCCGTACCGGCAGCGTATTGCTTTCGGGCGTGAGAACGGCAGGCTGGTGCGGGTGGCCTCCAGCAGCGGACAC
CATCTGTTATTGCACCGCACGATGACGCAAGCAGGGGAACGCCTGTCGCATATTGAACTTTTGAAGGGCGGGCGTCCCGG
TAACCTGGTGGAATATCGTTACGACGATAACGGGCAACTGACTGGCGTGGTGAACCGGGCTGGTGTGACGGTGCGCCAGT
TTGCCTATGAAAATGGCCTGATGACAGAGCATCGCAACGCGACGGGCTTTACCTGTACCTACCACTGGGAAGAGATTGAA
GGTTTCCCGCGCGTGGTGGAACACACGACCAGCGACGGCGAGGATTACCGGTTCCACTATGATTTTGCTGGCGGGCAGAC
GGTGGTAACCGGCAGGCCGGAGCAGAAGTGGCAGTGGTGGTTTGATGAAGAGACGTATGTGACTGCGCACCGGACGCCGG
GCGGCGGAATGTACCGCTTCACGTACAACGAAAACCATTTTCCGGTAGCGGTGGAACTCCCCGGCGAACGCAGGGTAACG
CTGGAATACGACACCCTGAGCCGGGTGGTGAAAGAGACGGACCCGGCAGGCCGGGTGACACAGACGCAGTGGAACGGCAG
TTTTGCTGAAATCACGCGCCGGGCGCTGGATGACGACCACGTATGGAAGGCGGATTACAACGAACACGGCCAGGTGATAC
GGGAGACGGACCCGGAAGGGCGCGTCACGCGGTACGGGTATGATGATCAGGGGCTGCCGGAGACGGTCTGCCACCCCGGT
AAACAGCAGGACCGTTACACCTGGAACGCGCTGGGGTTACTGAGCAGCCACCGTCGCATCACGGGCAGTGTGCAGTCCTG
GCAGTATACGCAGCGCGGGATGCTGGCGCGCCATACGGATGAAGAGAAACGGGAGACGCGCTGGCAGTACACCCCGGAAG
GGCTGGTTGCCAGTCTGAGCAACGGCAACGGGGCTCAGTACCGGTTCAGCTACGACGGCGACGGACGGCTGACGGGAGAA
CAGCGCCCGGACGGCCTGATAAGGATGTTTGCGCTGAATGCGGACGGGTTTCCGGTCATCATCCCGACGCAGGGCACAGA
GGGCGGGGTGCGCAATGAACAGCAGGAGCGTGATGCGCTGGGCCGCCTGCTGCGCAGTGACACGCAGCACAGTACACGGA
CCTTCAGCTACAACCGTCTTGACCAGATAACGGAAGTGACGCTCACCCCCACGGAAGAAGGGGAACGGCTGCACCACATG
CAGGCGGACACGGTGCGTTTTGCGTATGACCGCAGCGGGTGGCTGACGGCAGAGCACAGCGTGCACGGCAGTATCAAATA
CCGGCGCGATGCGCTGGGCAATCCCACCGATATCACGTTGCCGGACGGGCAGCATCTCAGTCATCTTTACTACGGCAGCG
GGCATCTGCTCCAGACGGCACTGGACGGTATCACGGTCAGTGAATATGAGCGTGACAGCCTGCACCGTCAGGTGATACGC
ACGCAGGGGAAACTGGCGACGTTCAGCGGCTACAACGCCGACAACCGGTTAAGCTGGCAGCGCAGCCTGCCAGGTGGCAG
CCAGAATCCACAGCAGGCGGTACTCCCCCGGCGCAGAACGACAGCGTGA

Upstream 100 bases:

>100_bases
GCGAAGACCATTCCCCGGAAATCCGCATTGCCCAAGGTTCCGGCAACATCTACATCAACAGCCAGCTGCCCGTAAGGATG
ACCACACTGAGTGTGATGCA

Downstream 100 bases:

>100_bases
CGGCGCGGGACTATATCTGGAACGCAGACGGTGAAGTCGGCGGCATCAATGACAAACTGCGCGGTTGCCTGGTGTTCAGC
TATGACCGCAGCGGCTGGCT

Product: putative Rhs-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 762; Mature: 762

Protein sequence:

>762_residues
MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLGGLAGAWRQAAKMGSKFGTKCAAKFIGGEMVGMAISD
TVMGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSY
PKEMLIPGHQIFDPEEQFYLSRLHDGCYVLHYTDCSYYVFDEFDDHGVAPLLFMETPYRQRIAFGRENGRLVRVASSSGH
HLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDDNGQLTGVVNRAGVTVRQFAYENGLMTEHRNATGFTCTYHWEEIE
GFPRVVEHTTSDGEDYRFHYDFAGGQTVVTGRPEQKWQWWFDEETYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVT
LEYDTLSRVVKETDPAGRVTQTQWNGSFAEITRRALDDDHVWKADYNEHGQVIRETDPEGRVTRYGYDDQGLPETVCHPG
KQQDRYTWNALGLLSSHRRITGSVQSWQYTQRGMLARHTDEEKRETRWQYTPEGLVASLSNGNGAQYRFSYDGDGRLTGE
QRPDGLIRMFALNADGFPVIIPTQGTEGGVRNEQQERDALGRLLRSDTQHSTRTFSYNRLDQITEVTLTPTEEGERLHHM
QADTVRFAYDRSGWLTAEHSVHGSIKYRRDALGNPTDITLPDGQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIR
TQGKLATFSGYNADNRLSWQRSLPGGSQNPQQAVLPRRRTTA

Sequences:

>Translated_762_residues
MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLGGLAGAWRQAAKMGSKFGTKCAAKFIGGEMVGMAISD
TVMGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSY
PKEMLIPGHQIFDPEEQFYLSRLHDGCYVLHYTDCSYYVFDEFDDHGVAPLLFMETPYRQRIAFGRENGRLVRVASSSGH
HLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDDNGQLTGVVNRAGVTVRQFAYENGLMTEHRNATGFTCTYHWEEIE
GFPRVVEHTTSDGEDYRFHYDFAGGQTVVTGRPEQKWQWWFDEETYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVT
LEYDTLSRVVKETDPAGRVTQTQWNGSFAEITRRALDDDHVWKADYNEHGQVIRETDPEGRVTRYGYDDQGLPETVCHPG
KQQDRYTWNALGLLSSHRRITGSVQSWQYTQRGMLARHTDEEKRETRWQYTPEGLVASLSNGNGAQYRFSYDGDGRLTGE
QRPDGLIRMFALNADGFPVIIPTQGTEGGVRNEQQERDALGRLLRSDTQHSTRTFSYNRLDQITEVTLTPTEEGERLHHM
QADTVRFAYDRSGWLTAEHSVHGSIKYRRDALGNPTDITLPDGQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIR
TQGKLATFSGYNADNRLSWQRSLPGGSQNPQQAVLPRRRTTA
>Mature_762_residues
MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLGGLAGAWRQAAKMGSKFGTKCAAKFIGGEMVGMAISD
TVMGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSY
PKEMLIPGHQIFDPEEQFYLSRLHDGCYVLHYTDCSYYVFDEFDDHGVAPLLFMETPYRQRIAFGRENGRLVRVASSSGH
HLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDDNGQLTGVVNRAGVTVRQFAYENGLMTEHRNATGFTCTYHWEEIE
GFPRVVEHTTSDGEDYRFHYDFAGGQTVVTGRPEQKWQWWFDEETYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVT
LEYDTLSRVVKETDPAGRVTQTQWNGSFAEITRRALDDDHVWKADYNEHGQVIRETDPEGRVTRYGYDDQGLPETVCHPG
KQQDRYTWNALGLLSSHRRITGSVQSWQYTQRGMLARHTDEEKRETRWQYTPEGLVASLSNGNGAQYRFSYDGDGRLTGE
QRPDGLIRMFALNADGFPVIIPTQGTEGGVRNEQQERDALGRLLRSDTQHSTRTFSYNRLDQITEVTLTPTEEGERLHHM
QADTVRFAYDRSGWLTAEHSVHGSIKYRRDALGNPTDITLPDGQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIR
TQGKLATFSGYNADNRLSWQRSLPGGSQNPQQAVLPRRRTTA

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=503, Percent_Identity=26.2425447316103, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI48994942, Length=570, Percent_Identity=23.6842105263158, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1790020, Length=573, Percent_Identity=24.0837696335079, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786917, Length=563, Percent_Identity=23.8010657193606, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 86491; Mature: 86491

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLGGLAGAWRQAAKMGSKF
CCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTKCAAKFIGGEMVGMAISDTVMGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYA
HHHHHHHHHCCEEEEEEHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHH
SHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSYPKEMLIPGHQIFDPEEQFYL
HHCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHH
SRLHDGCYVLHYTDCSYYVFDEFDDHGVAPLLFMETPYRQRIAFGRENGRLVRVASSSGH
HHHCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCC
HLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDDNGQLTGVVNRAGVTVRQFAYENGL
EEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEHHHHCCC
MTEHRNATGFTCTYHWEEIEGFPRVVEHTTSDGEDYRFHYDFAGGQTVVTGRPEQKWQWW
CCCCCCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCEEE
FDEETYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVTLEYDTLSRVVKETDPAGRVT
ECCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCEE
QTQWNGSFAEITRRALDDDHVWKADYNEHGQVIRETDPEGRVTRYGYDDQGLPETVCHPG
EEECCCCHHHHHHHHCCCCCEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHCCCC
KQQDRYTWNALGLLSSHRRITGSVQSWQYTQRGMLARHTDEEKRETRWQYTPEGLVASLS
CCCCCEEEHHHHHHHCCCEEECCCHHHHHHHCCCHHCCCCHHHHHCCCCCCCCHHEEEEC
NGNGAQYRFSYDGDGRLTGEQRPDGLIRMFALNADGFPVIIPTQGTEGGVRNEQQERDAL
CCCCEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHH
GRLLRSDTQHSTRTFSYNRLDQITEVTLTPTEEGERLHHMQADTVRFAYDRSGWLTAEHS
HHHHHCCCCCCCEEECHHHHCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCEEECCC
VHGSIKYRRDALGNPTDITLPDGQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIR
CCCCEEEHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHCCCEECHHHHHHHHHHHHH
TQGKLATFSGYNADNRLSWQRSLPGGSQNPQQAVLPRRRTTA
HCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLGGLAGAWRQAAKMGSKF
CCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTKCAAKFIGGEMVGMAISDTVMGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYA
HHHHHHHHHCCEEEEEEHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHH
SHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSYPKEMLIPGHQIFDPEEQFYL
HHCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHH
SRLHDGCYVLHYTDCSYYVFDEFDDHGVAPLLFMETPYRQRIAFGRENGRLVRVASSSGH
HHHCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCC
HLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDDNGQLTGVVNRAGVTVRQFAYENGL
EEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEHHHHCCC
MTEHRNATGFTCTYHWEEIEGFPRVVEHTTSDGEDYRFHYDFAGGQTVVTGRPEQKWQWW
CCCCCCCCCEEEEEEHHHHCCCHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCEEE
FDEETYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVTLEYDTLSRVVKETDPAGRVT
ECCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCEE
QTQWNGSFAEITRRALDDDHVWKADYNEHGQVIRETDPEGRVTRYGYDDQGLPETVCHPG
EEECCCCHHHHHHHHCCCCCEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCHHHCCCC
KQQDRYTWNALGLLSSHRRITGSVQSWQYTQRGMLARHTDEEKRETRWQYTPEGLVASLS
CCCCCEEEHHHHHHHCCCEEECCCHHHHHHHCCCHHCCCCHHHHHCCCCCCCCHHEEEEC
NGNGAQYRFSYDGDGRLTGEQRPDGLIRMFALNADGFPVIIPTQGTEGGVRNEQQERDAL
CCCCEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHH
GRLLRSDTQHSTRTFSYNRLDQITEVTLTPTEEGERLHHMQADTVRFAYDRSGWLTAEHS
HHHHHCCCCCCCEEECHHHHCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCEEECCC
VHGSIKYRRDALGNPTDITLPDGQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIR
CCCCEEEHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHCCCEECHHHHHHHHHHHHH
TQGKLATFSGYNADNRLSWQRSLPGGSQNPQQAVLPRRRTTA
HCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]