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The map label for this gene is 29350113

Identifier: 29350113

GI number: 29350113

Start: 6174951

End: 6175520

Strand: Reverse

Name: 29350113

Synonym: BT_4705

Alternate gene names: NA

Gene position: 6175520-6174951 (Counterclockwise)

Preceding gene: 29350123

Following gene: 29350097

Centisome position: 98.64

GC content: 37.02

Gene sequence:

>570_bases
ATGAAAATATCTTTTTCCAGACAGACTAAAGAAAGAGCTTTCAAACAACTTTACGAGGATTATTATGCCCCTTTCTGCCT
GTATGCAAAAAGATTTGTAGATGATAAAGAAGTCCGCGAGGACATTGTTTCGGATGTATTCACCTCCCTATGGGACAAGT
TGGATACCGACTCTTTCGATTTGCAATCAGAGACAGCATTGGGATATATAAAAATGTGTGTAAAAAACAGCTGTTTGAAC
TTTCTGAAACATCAGGAGTATGAATGGAGTTATGCCGAAAATATCCAAAAGAAAGCTCCTCTATATGAAACAGAAACAGA
TAGTGTATATACACTTGATGAGTTATACCGAATGCTATACGAAACATTAAATAAGCTTCCGGAAAACTATCGCACCGTAT
TTATGAAAAGTTTCTTTGAAGGCAAAACACATGCGGAAATTGCCGAAGAAATGAATCTCAGCGTAAAATCCATTAATCGG
TATAAACAAAAAACAATGGAACTCCTGCGGAACGAGTTGAAAGATTACCTCCCGCTGTTTTTATTATTCCTGTCTCCCGA
GCAACTGTAA

Upstream 100 bases:

>100_bases
GCTTCATACCAAAAACAAAAAAAGAAAGAAAATTTTAGGAAATGCTGATTTTCTTATTATATATTTGCAGTAAAATGAAA
AACTACAGAATCTCAAAATA

Downstream 100 bases:

>100_bases
GCTCTCTGCTAAAACACGGCACTCTTTACGATTAATCTTCCCATTTCCCGTTTGAGGAATATGATTTACCGTATAAATAT
ATTTAGGACGATAATAAGAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Transcriptional Regulator LuxR Family; ECF Family RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFDLQSETALGYIKMCVKNSCLN
FLKHQEYEWSYAENIQKKAPLYETETDSVYTLDELYRMLYETLNKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINR
YKQKTMELLRNELKDYLPLFLLFLSPEQL

Sequences:

>Translated_189_residues
MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFDLQSETALGYIKMCVKNSCLN
FLKHQEYEWSYAENIQKKAPLYETETDSVYTLDELYRMLYETLNKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINR
YKQKTMELLRNELKDYLPLFLLFLSPEQL
>Mature_189_residues
MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFDLQSETALGYIKMCVKNSCLN
FLKHQEYEWSYAENIQKKAPLYETETDSVYTLDELYRMLYETLNKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINR
YKQKTMELLRNELKDYLPLFLLFLSPEQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22742; Mature: 22742

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFD
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LQSETALGYIKMCVKNSCLNFLKHQEYEWSYAENIQKKAPLYETETDSVYTLDELYRMLY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHH
ETLNKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINRYKQKTMELLRNELKDYLPLF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFLSPEQL
HHHHCCCCC
>Mature Secondary Structure
MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFD
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LQSETALGYIKMCVKNSCLNFLKHQEYEWSYAENIQKKAPLYETETDSVYTLDELYRMLY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHH
ETLNKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINRYKQKTMELLRNELKDYLPLF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFLSPEQL
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA