| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29350090
Identifier: 29350090
GI number: 29350090
Start: 6140802
End: 6143240
Strand: Reverse
Name: 29350090
Synonym: BT_4682
Alternate gene names: NA
Gene position: 6143240-6140802 (Counterclockwise)
Preceding gene: 29350091
Following gene: 29350089
Centisome position: 98.13
GC content: 44.28
Gene sequence:
>2439_bases ATGAGAAAGAAACATTCGCTCCTATTTTGTGCCTTATTTACGATTTTTACGGGACATGCAGAAGATACGGATTATACCAA AGGACTTTCTATCTGGTTTGATTCTCCCAATACATTACAAGGAAAAGAAGTCTGGCATAGTTCCAAACAGGATGCCAGTT GGGAATCACAGTCATTGCCTATAGGTAATGGAAGTATCGGTGCTAATATTTTGGGTTCAATAGAGGCGGAACGCATAACT TTTAATGAGAAAACGCTTTGGCGTGGCGGTCCTAATACAGCCAAAGGAGCAGATTACTATTGGAATGTGAACAAACAGTC CGCGCACATCCTGGACGAAATACGTAAAGCATTCGTAGAAGGAGACCAGAAAAAAGCGGAAAAACTGACACGCGAGAATT TCAACAGTGAAGTCCCTTATGAATTTTCCAGAGAAAAGCCTTTCCGGTTTGGTAACTTCACTACAATGGGAGAATTCTAT GTAGAAACAGGATTAAGCACAATAGGCATGAGTGACTACAAACGTATCTTATCATTGGATTCGGCAATGGCGGTGGTTCA GTTCAAAAAAGATGACGTAGCATATCAGCGTAACTATTTTATTTCTTACCCTGCCAATGTGATGGTGATGCGTTTCAGTG CCGACCAACCGGGCAAACAGAATCTCACTTTCAGATATGCCCCCAATCCGGTATCTACAGGGCAGTTCTCTGCCGACGGT AATAATGGTCTTGTTTATACGGCTTCTCTGGATAATAATGGAATGAAATATGCAGTCCGTATTCAGGCAACAGTAAAAGG CGGTACCTTAAACAACACAGATGGACGGATTACAGTGAAAGAAGCTGATGAAGTCGTATTCTATGTGACTGCAGATACCG ATTATAAAATGAATTTCGCACCGGACTTTACCGATCCAAAAACATATGTCGGCGTTAATCCGCTTGAAACAACCCAGCAA TGGATGAAGGATGCCGTATCCAAAGGATATTCCAACTTACTGGACGAACACTACAAAGACTACGCTTCTTTGTTCAACCG AGTGAAACTGGAATTGAATCCTACAGTGAAAACATCCAATCTGCCCACTGCTCAACGACTGAAAAACTATCGGAACGGAC AACCTGACTACTACTTGGAAAAGCTCTATTACCAGTTCGGACGCTATCTGTTGATAGCCAGTTCCCGACCGGGTAATATG CCTGCCAATCTGCAAGGCATCTGGCATAACAACATAGACGGCCCCTGGCGTGTGGATTATCATAATAACATTAATATCCA AATGAACTACTGGCCGGCCTGCTCTACAAACCTGGATGAGTGCATGCTCCCGCTAATTGATTTCATCCGTACCTTAGTGA AACCGGGTGAAAAGACCGCTCAGTCTTATTTTGGTGCAAGAGGATGGACAGCATCTATTTCCGCCAACATCTTTGGCTTT ACTACCCCATTGGAAAGTCAGGACATGTCCTGGAACTTTAATCCGATGGCAGGTCCCTGGCTGGCAACTCACGTTTGGGA ATATTATGACTATACCAAGGACCTGAAATTCCTGAAAGAAACAGGATATGAACTGATTAAGAGCAGCGCCAACTTTACTG TTGACTATCTCTGGCATAAACCGGACGGAACGTATACGGCTGCCCCCTCTACTTCACCGGAACACGGCCCTATCGATCAG GGAGCTACATTTGTGCATGCAGTTGTCCGTGAAATCCTGCTGGATGCTATCCAAGCGAGCAAAGAATTGGGAATAGACAA AAAGGAACGTAAACAATGGGAGCACGTGCTTGCCAATCTCGTCCCTTATAAAATAGGTCGCTATGGTCAGTTACTGGAAT GGTCAACCGATATCGACGATCCGAAAGACGAACATCGCCATGTAAATCATCTCTTCGGTCTGCATCCCGGACACACTGTT TCTCCTGTCACTACTCCCGAACTGGCAGAAGCAGCCAAAGTTGTATTGGTGCATCGTGGTGACGGAGCTACCGGCTGGAG TATGGGATGGAAGTTGAACCAGTGGGCACGCTTACAAGATGGAAATCACGCTTATACCCTCTTTGGTAATCTGCTGAAAA ACGGAACAGTAGATAACCTTTGGGATACACACCCACCCTTCCAGATTGACGGAAACTTTGGCGGCACAGCCGGTATCACA GAAATGCTATTACAGAGCCACATGGGATTCATCCAATTACTACCTGCTTTACCGGATGCCTGGAAAGACGGCTCTATTTA TGGCATATGCGCAAAAGGAAATTTCGAGATAGATATTGCATGGAAAGACGGACTTCTAAAAGAAGCGACTATCCTGTCCA AAGCAGGACAGAATTGTATCGTGAAGTACGCCGGTCAAACAATCTCTTTTAAAACAGTGAAAGGGCGTAGCTATCAGCTA AAATACGACAAAGAGAATGGATTAATAAAAATCAAATAA
Upstream 100 bases:
>100_bases AGCTGTTTTTTTATTACTTTTGTGCCTTCAGCCCCAAAGAGCTGTAACACACTTAAATTCATGAAATATACTTTTATCTA ATAATAAACACGCTACGACA
Downstream 100 bases:
>100_bases TAACATAACACTTTAACCTATGTCATCTTAGATGAATACAAAAACATTTACCCCCAAATCGACCATGAAAATTTATACTT GTCTTTGCTTGCTTTTCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Trehalose And Maltose Hydrolase-Like Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Fibronectin Type III Domain-Containing Protein; Glycosyl Hydrolase Family Protein; 1 2-A-L-Fucosidase
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MRKKHSLLFCALFTIFTGHAEDTDYTKGLSIWFDSPNTLQGKEVWHSSKQDASWESQSLPIGNGSIGANILGSIEAERIT FNEKTLWRGGPNTAKGADYYWNVNKQSAHILDEIRKAFVEGDQKKAEKLTRENFNSEVPYEFSREKPFRFGNFTTMGEFY VETGLSTIGMSDYKRILSLDSAMAVVQFKKDDVAYQRNYFISYPANVMVMRFSADQPGKQNLTFRYAPNPVSTGQFSADG NNGLVYTASLDNNGMKYAVRIQATVKGGTLNNTDGRITVKEADEVVFYVTADTDYKMNFAPDFTDPKTYVGVNPLETTQQ WMKDAVSKGYSNLLDEHYKDYASLFNRVKLELNPTVKTSNLPTAQRLKNYRNGQPDYYLEKLYYQFGRYLLIASSRPGNM PANLQGIWHNNIDGPWRVDYHNNINIQMNYWPACSTNLDECMLPLIDFIRTLVKPGEKTAQSYFGARGWTASISANIFGF TTPLESQDMSWNFNPMAGPWLATHVWEYYDYTKDLKFLKETGYELIKSSANFTVDYLWHKPDGTYTAAPSTSPEHGPIDQ GATFVHAVVREILLDAIQASKELGIDKKERKQWEHVLANLVPYKIGRYGQLLEWSTDIDDPKDEHRHVNHLFGLHPGHTV SPVTTPELAEAAKVVLVHRGDGATGWSMGWKLNQWARLQDGNHAYTLFGNLLKNGTVDNLWDTHPPFQIDGNFGGTAGIT EMLLQSHMGFIQLLPALPDAWKDGSIYGICAKGNFEIDIAWKDGLLKEATILSKAGQNCIVKYAGQTISFKTVKGRSYQL KYDKENGLIKIK
Sequences:
>Translated_812_residues MRKKHSLLFCALFTIFTGHAEDTDYTKGLSIWFDSPNTLQGKEVWHSSKQDASWESQSLPIGNGSIGANILGSIEAERIT FNEKTLWRGGPNTAKGADYYWNVNKQSAHILDEIRKAFVEGDQKKAEKLTRENFNSEVPYEFSREKPFRFGNFTTMGEFY VETGLSTIGMSDYKRILSLDSAMAVVQFKKDDVAYQRNYFISYPANVMVMRFSADQPGKQNLTFRYAPNPVSTGQFSADG NNGLVYTASLDNNGMKYAVRIQATVKGGTLNNTDGRITVKEADEVVFYVTADTDYKMNFAPDFTDPKTYVGVNPLETTQQ WMKDAVSKGYSNLLDEHYKDYASLFNRVKLELNPTVKTSNLPTAQRLKNYRNGQPDYYLEKLYYQFGRYLLIASSRPGNM PANLQGIWHNNIDGPWRVDYHNNINIQMNYWPACSTNLDECMLPLIDFIRTLVKPGEKTAQSYFGARGWTASISANIFGF TTPLESQDMSWNFNPMAGPWLATHVWEYYDYTKDLKFLKETGYELIKSSANFTVDYLWHKPDGTYTAAPSTSPEHGPIDQ GATFVHAVVREILLDAIQASKELGIDKKERKQWEHVLANLVPYKIGRYGQLLEWSTDIDDPKDEHRHVNHLFGLHPGHTV SPVTTPELAEAAKVVLVHRGDGATGWSMGWKLNQWARLQDGNHAYTLFGNLLKNGTVDNLWDTHPPFQIDGNFGGTAGIT EMLLQSHMGFIQLLPALPDAWKDGSIYGICAKGNFEIDIAWKDGLLKEATILSKAGQNCIVKYAGQTISFKTVKGRSYQL KYDKENGLIKIK >Mature_812_residues MRKKHSLLFCALFTIFTGHAEDTDYTKGLSIWFDSPNTLQGKEVWHSSKQDASWESQSLPIGNGSIGANILGSIEAERIT FNEKTLWRGGPNTAKGADYYWNVNKQSAHILDEIRKAFVEGDQKKAEKLTRENFNSEVPYEFSREKPFRFGNFTTMGEFY VETGLSTIGMSDYKRILSLDSAMAVVQFKKDDVAYQRNYFISYPANVMVMRFSADQPGKQNLTFRYAPNPVSTGQFSADG NNGLVYTASLDNNGMKYAVRIQATVKGGTLNNTDGRITVKEADEVVFYVTADTDYKMNFAPDFTDPKTYVGVNPLETTQQ WMKDAVSKGYSNLLDEHYKDYASLFNRVKLELNPTVKTSNLPTAQRLKNYRNGQPDYYLEKLYYQFGRYLLIASSRPGNM PANLQGIWHNNIDGPWRVDYHNNINIQMNYWPACSTNLDECMLPLIDFIRTLVKPGEKTAQSYFGARGWTASISANIFGF TTPLESQDMSWNFNPMAGPWLATHVWEYYDYTKDLKFLKETGYELIKSSANFTVDYLWHKPDGTYTAAPSTSPEHGPIDQ GATFVHAVVREILLDAIQASKELGIDKKERKQWEHVLANLVPYKIGRYGQLLEWSTDIDDPKDEHRHVNHLFGLHPGHTV SPVTTPELAEAAKVVLVHRGDGATGWSMGWKLNQWARLQDGNHAYTLFGNLLKNGTVDNLWDTHPPFQIDGNFGGTAGIT EMLLQSHMGFIQLLPALPDAWKDGSIYGICAKGNFEIDIAWKDGLLKEATILSKAGQNCIVKYAGQTISFKTVKGRSYQL KYDKENGLIKIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91795; Mature: 91795
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKKHSLLFCALFTIFTGHAEDTDYTKGLSIWFDSPNTLQGKEVWHSSKQDASWESQSLP CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCC IGNGSIGANILGSIEAERITFNEKTLWRGGPNTAKGADYYWNVNKQSAHILDEIRKAFVE CCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC GDQKKAEKLTRENFNSEVPYEFSREKPFRFGNFTTMGEFYVETGLSTIGMSDYKRILSLD CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCHHHHHHHHHHH SAMAVVQFKKDDVAYQRNYFISYPANVMVMRFSADQPGKQNLTFRYAPNPVSTGQFSADG CCEEEEEECCCCCEEECCEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCC NNGLVYTASLDNNGMKYAVRIQATVKGGTLNNTDGRITVKEADEVVFYVTADTDYKMNFA CCCEEEEEEECCCCCEEEEEEEEEEECCEECCCCCEEEEEECCEEEEEEECCCCEEEECC PDFTDPKTYVGVNPLETTQQWMKDAVSKGYSNLLDEHYKDYASLFNRVKLELNPTVKTSN CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCC LPTAQRLKNYRNGQPDYYLEKLYYQFGRYLLIASSRPGNMPANLQGIWHNNIDGPWRVDY CCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEEE HNNINIQMNYWPACSTNLDECMLPLIDFIRTLVKPGEKTAQSYFGARGWTASISANIFGF CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECEEEEE TTPLESQDMSWNFNPMAGPWLATHVWEYYDYTKDLKFLKETGYELIKSSANFTVDYLWHK ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC PDGTYTAAPSTSPEHGPIDQGATFVHAVVREILLDAIQASKELGIDKKERKQWEHVLANL CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VPYKIGRYGQLLEWSTDIDDPKDEHRHVNHLFGLHPGHTVSPVTTPELAEAAKVVLVHRG HHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHCCEEEEEEECC DGATGWSMGWKLNQWARLQDGNHAYTLFGNLLKNGTVDNLWDTHPPFQIDGNFGGTAGIT CCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHHH EMLLQSHMGFIQLLPALPDAWKDGSIYGICAKGNFEIDIAWKDGLLKEATILSKAGQNCI HHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCEE VKYAGQTISFKTVKGRSYQLKYDKENGLIKIK EEECCCEEEEEEECCCEEEEEEECCCCEEEEC >Mature Secondary Structure MRKKHSLLFCALFTIFTGHAEDTDYTKGLSIWFDSPNTLQGKEVWHSSKQDASWESQSLP CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCC IGNGSIGANILGSIEAERITFNEKTLWRGGPNTAKGADYYWNVNKQSAHILDEIRKAFVE CCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC GDQKKAEKLTRENFNSEVPYEFSREKPFRFGNFTTMGEFYVETGLSTIGMSDYKRILSLD CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCHHHHHHHHHHH SAMAVVQFKKDDVAYQRNYFISYPANVMVMRFSADQPGKQNLTFRYAPNPVSTGQFSADG CCEEEEEECCCCCEEECCEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCC NNGLVYTASLDNNGMKYAVRIQATVKGGTLNNTDGRITVKEADEVVFYVTADTDYKMNFA CCCEEEEEEECCCCCEEEEEEEEEEECCEECCCCCEEEEEECCEEEEEEECCCCEEEECC PDFTDPKTYVGVNPLETTQQWMKDAVSKGYSNLLDEHYKDYASLFNRVKLELNPTVKTSN CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCC LPTAQRLKNYRNGQPDYYLEKLYYQFGRYLLIASSRPGNMPANLQGIWHNNIDGPWRVDY CCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEEE HNNINIQMNYWPACSTNLDECMLPLIDFIRTLVKPGEKTAQSYFGARGWTASISANIFGF CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECEEEEE TTPLESQDMSWNFNPMAGPWLATHVWEYYDYTKDLKFLKETGYELIKSSANFTVDYLWHK ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC PDGTYTAAPSTSPEHGPIDQGATFVHAVVREILLDAIQASKELGIDKKERKQWEHVLANL CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH VPYKIGRYGQLLEWSTDIDDPKDEHRHVNHLFGLHPGHTVSPVTTPELAEAAKVVLVHRG HHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHCCEEEEEEECC DGATGWSMGWKLNQWARLQDGNHAYTLFGNLLKNGTVDNLWDTHPPFQIDGNFGGTAGIT CCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHHH EMLLQSHMGFIQLLPALPDAWKDGSIYGICAKGNFEIDIAWKDGLLKEATILSKAGQNCI HHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCEE VKYAGQTISFKTVKGRSYQLKYDKENGLIKIK EEECCCEEEEEEECCCEEEEEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA