| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is mutS2 [H]
Identifier: 29350088
GI number: 29350088
Start: 6135613
End: 6138114
Strand: Reverse
Name: mutS2 [H]
Synonym: BT_4680
Alternate gene names: 29350088
Gene position: 6138114-6135613 (Counterclockwise)
Preceding gene: 29350089
Following gene: 29350087
Centisome position: 98.05
GC content: 46.16
Gene sequence:
>2502_bases ATGATATATCCTCAAAATTTTGAGCAAAAGATAGGATTCGACCAAATAAGGCAGTTACTGAAAGACAAGTGTCTCAGCAC TTTAGGCGAAGAACGGGTTTCAGACATGAGCTTTACCGAGCAATTTGAAGAAGTGGAAGAGAAACTGAACCAGGTAACTG AATTTGTGCGTATCATTCAGGAAGAAGACGGATTTCCCGATCAATTCTTCTTCGATGTCCGCCCATCACTGAAACGGGTA CGGATAGAAGGCATGTATTTGGACGAACAAGAACTATTTGACCTACGCCGTTCATTAGAGACTATTCGTGATATCGTACG TTTTCTACACCGGAATGAAGAAGAGGAGGAAAACGATGTACCCTACCCCAGCCTGAAACGGTTGGCGGGAGATATAGCCG TATTTCCTCAACTGATTGGTAAAATAGACGGTATCCTTAATAAATATGGAAAAATAAAAGACAATGCATCCAGCGAATTG GCCCGTATCCGTCGGGAGCTGTCCAGCACAATGGGAAGTATCTCACGTTCACTAAACAGTATCCTGCGCAATGCACAATC TGAAGGCTATGTAGACAAAGACGTAGCTCCGACTATGCGTGACGGCCGTCTCGTTATTCCTGTCGCACCGGGATTAAAAC GAAAGATCAAAGGTATCGTGCACGATGAATCGGCAAGTGGAAAGACCGTATTCATCGAACCGGCAGAGGTCGTAGAAGCC AACAACCGTATTCGCGAACTTGAAGGGGATGAACGACGGGAAATCATTCGTATCCTTACAGAGTTTTCCAATATCCTGCG TCCATCTATTCCAGACATCCTTCAATCGTATGAATTTCTGGCAGAGATCGACTTTATCCGTGCGAAAAGTTATTTTGCCA TACAGACCAACAGCCTGAAACCGACAGTAGAAAAGGAACAACTATTGGATTGGACAATGGCAGTGCATCCCTTACTGCAA CTCTCATTAGCCAAACATGGGAAAAAGGTTGTTCCACTGGATATAGAACTAAACCAAAAGCAGCGTATCCTTATCATTTC CGGTCCCAATGCCGGAGGAAAGTCTGTCTGTCTGAAAACAGTCGGTTTGCTACAATATATGTTGCAATGCGGTATGCTGA TTCCTTTGCACGAACGCAGTCATGCAGGTATGTTCAGCAGTATCTTCATCGATATCGGTGACGAACAGTCCATCGAAGAT GACCTGAGTACTTATTCTTCGCACCTGACCAATATGAAAATCATGATGAAAAGCTGCAATGAACGCAGCCTCATCCTGAT CGACGAGTTCGGGGGAGGTACGGAACCACAGATCGGAGGAGCCATCGCCGAAGCTGTGCTGAAACGTTTCAATCAGAAAG GAACGTTCGGAGTAATAACGACTCACTATCAGAATCTGAAGCATTTTGCCGAAGATCATGAAGGAGTAGTCAACGGCGCC ATGCTTTACGACCGCCATTTGATGCAGGCACTCTTTCAACTACAAATCGGAAATCCGGGCAGTTCATTTGCCGTAGAGAT TGCCCGGAAAATCGGATTGCCGGAAGATGTGATTGCAGATGCTTCGGAAATTGTAGGAAGCGAATACATCAATGCCGATA AATATCTTCAGGACATTGTACGCGACAAGCGCTACTGGGAAGGGAAACGACAAACGATCCGCCAACGGGAAAAACACATG GAAGACACCATCGCCCGTTATCAAACGGAAATGGAAGAGTTGCAAAAATCACGGAAGGAGATTATCAGACAAGCTAAAGA AGAAGCTGAACGAATGTTGCAGGAATCAAACGCCCGCATCGAAAATACCATCCGTACGATTAAAGAAGCTCAGGCCGAAA AAGAAAAGACCCGCTTGGTACGTCAGGAGCTGAACGATTTCCGTACTTCCCTGGAAACAATGACTTCCAAAGAACAGGAA GAAAAGATTGCCCGCAAAATGGAGAAGCTGAAAGAGAAGCAGGAACGGAAGAAAAACAAGAAAAACGAACCGAAAACCGC CGCATCACAGACAGCCGCTACCCCTAAAGTAATACCTATCACCGTTGGTGAGAACGTAAAGATCAAGGGACAGACAAGCG TCGGACAGGTCATGGAAATCAATGGTAAAAATGCAACCGTCGCTTTCGGAAGCATTAAAACCACGGTGAAACTGGATCGT CTGGAGCGAAGCAACGCCGCCCCCAAGACGGAAGGAATAGCCAAAAGTACGTTTGTCAGCAGTCAGACACATGACCAGAT GTACGAGAAGAAGCTTAATTTCAAGCAAGATATTGATGTACGGGGGATGCGTGGTGACGAGGCTCTGCAGGCTATCACTT ATTTCGTAGACGATGCCATCCTTGTCGGTATGGACCGTGTACGTATTCTTCACGGAACAGGAACCGGAATACTCCGTACA CTCATCCGCCAATACCTGTCCACCGTACCGGGCGTCAGTCATTATGCAGACGAGCATGTCCAGTTCGGAGGTGCCGGAAT TACGGTAGTCGATTTTGACTAA
Upstream 100 bases:
>100_bases AAGCGGTGCAAAGGTACGAATCATTTTTAAATCTGCAAACAATCTGACATTTTTTTCGCGAAATAATCGTATTTTTGCAG CCTATAATAAGTATAAAGAC
Downstream 100 bases:
>100_bases TCTGAAAACAAAACGATCGAAGAACTTGTTCTCATTTAGAAAACCACTACCTTTGTGTTACAGTGGTTTTCTAAAACGAG AATAAAGCATGAAGAATAAT
Product: DNA mismatch repair protein MutS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MIYPQNFEQKIGFDQIRQLLKDKCLSTLGEERVSDMSFTEQFEEVEEKLNQVTEFVRIIQEEDGFPDQFFFDVRPSLKRV RIEGMYLDEQELFDLRRSLETIRDIVRFLHRNEEEEENDVPYPSLKRLAGDIAVFPQLIGKIDGILNKYGKIKDNASSEL ARIRRELSSTMGSISRSLNSILRNAQSEGYVDKDVAPTMRDGRLVIPVAPGLKRKIKGIVHDESASGKTVFIEPAEVVEA NNRIRELEGDERREIIRILTEFSNILRPSIPDILQSYEFLAEIDFIRAKSYFAIQTNSLKPTVEKEQLLDWTMAVHPLLQ LSLAKHGKKVVPLDIELNQKQRILIISGPNAGGKSVCLKTVGLLQYMLQCGMLIPLHERSHAGMFSSIFIDIGDEQSIED DLSTYSSHLTNMKIMMKSCNERSLILIDEFGGGTEPQIGGAIAEAVLKRFNQKGTFGVITTHYQNLKHFAEDHEGVVNGA MLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEDVIADASEIVGSEYINADKYLQDIVRDKRYWEGKRQTIRQREKHM EDTIARYQTEMEELQKSRKEIIRQAKEEAERMLQESNARIENTIRTIKEAQAEKEKTRLVRQELNDFRTSLETMTSKEQE EKIARKMEKLKEKQERKKNKKNEPKTAASQTAATPKVIPITVGENVKIKGQTSVGQVMEINGKNATVAFGSIKTTVKLDR LERSNAAPKTEGIAKSTFVSSQTHDQMYEKKLNFKQDIDVRGMRGDEALQAITYFVDDAILVGMDRVRILHGTGTGILRT LIRQYLSTVPGVSHYADEHVQFGGAGITVVDFD
Sequences:
>Translated_833_residues MIYPQNFEQKIGFDQIRQLLKDKCLSTLGEERVSDMSFTEQFEEVEEKLNQVTEFVRIIQEEDGFPDQFFFDVRPSLKRV RIEGMYLDEQELFDLRRSLETIRDIVRFLHRNEEEEENDVPYPSLKRLAGDIAVFPQLIGKIDGILNKYGKIKDNASSEL ARIRRELSSTMGSISRSLNSILRNAQSEGYVDKDVAPTMRDGRLVIPVAPGLKRKIKGIVHDESASGKTVFIEPAEVVEA NNRIRELEGDERREIIRILTEFSNILRPSIPDILQSYEFLAEIDFIRAKSYFAIQTNSLKPTVEKEQLLDWTMAVHPLLQ LSLAKHGKKVVPLDIELNQKQRILIISGPNAGGKSVCLKTVGLLQYMLQCGMLIPLHERSHAGMFSSIFIDIGDEQSIED DLSTYSSHLTNMKIMMKSCNERSLILIDEFGGGTEPQIGGAIAEAVLKRFNQKGTFGVITTHYQNLKHFAEDHEGVVNGA MLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEDVIADASEIVGSEYINADKYLQDIVRDKRYWEGKRQTIRQREKHM EDTIARYQTEMEELQKSRKEIIRQAKEEAERMLQESNARIENTIRTIKEAQAEKEKTRLVRQELNDFRTSLETMTSKEQE EKIARKMEKLKEKQERKKNKKNEPKTAASQTAATPKVIPITVGENVKIKGQTSVGQVMEINGKNATVAFGSIKTTVKLDR LERSNAAPKTEGIAKSTFVSSQTHDQMYEKKLNFKQDIDVRGMRGDEALQAITYFVDDAILVGMDRVRILHGTGTGILRT LIRQYLSTVPGVSHYADEHVQFGGAGITVVDFD >Mature_833_residues MIYPQNFEQKIGFDQIRQLLKDKCLSTLGEERVSDMSFTEQFEEVEEKLNQVTEFVRIIQEEDGFPDQFFFDVRPSLKRV RIEGMYLDEQELFDLRRSLETIRDIVRFLHRNEEEEENDVPYPSLKRLAGDIAVFPQLIGKIDGILNKYGKIKDNASSEL ARIRRELSSTMGSISRSLNSILRNAQSEGYVDKDVAPTMRDGRLVIPVAPGLKRKIKGIVHDESASGKTVFIEPAEVVEA NNRIRELEGDERREIIRILTEFSNILRPSIPDILQSYEFLAEIDFIRAKSYFAIQTNSLKPTVEKEQLLDWTMAVHPLLQ LSLAKHGKKVVPLDIELNQKQRILIISGPNAGGKSVCLKTVGLLQYMLQCGMLIPLHERSHAGMFSSIFIDIGDEQSIED DLSTYSSHLTNMKIMMKSCNERSLILIDEFGGGTEPQIGGAIAEAVLKRFNQKGTFGVITTHYQNLKHFAEDHEGVVNGA MLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEDVIADASEIVGSEYINADKYLQDIVRDKRYWEGKRQTIRQREKHM EDTIARYQTEMEELQKSRKEIIRQAKEEAERMLQESNARIENTIRTIKEAQAEKEKTRLVRQELNDFRTSLETMTSKEQE EKIARKMEKLKEKQERKKNKKNEPKTAASQTAATPKVIPITVGENVKIKGQTSVGQVMEINGKNATVAFGSIKTTVKLDR LERSNAAPKTEGIAKSTFVSSQTHDQMYEKKLNFKQDIDVRGMRGDEALQAITYFVDDAILVGMDRVRILHGTGTGILRT LIRQYLSTVPGVSHYADEHVQFGGAGITVVDFD
Specific function: This Protein Is Involved In The Repair Of Mismatches In DNA. It Is Possible That It Carries Out The Mismatch Recognition Step. This Protein Has A Weak Atpase Activity. [C]
COG id: COG1193
COG function: function code L; Mismatch repair ATPase (MutS family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Smr domain [H]
Homologues:
Organism=Homo sapiens, GI284813531, Length=301, Percent_Identity=27.2425249169435, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI26638666, Length=232, Percent_Identity=29.3103448275862, Blast_Score=87, Evalue=8e-17, Organism=Homo sapiens, GI4505253, Length=232, Percent_Identity=29.3103448275862, Blast_Score=87, Evalue=8e-17, Organism=Homo sapiens, GI36949366, Length=225, Percent_Identity=28.4444444444444, Blast_Score=87, Evalue=9e-17, Organism=Homo sapiens, GI26638664, Length=233, Percent_Identity=29.1845493562232, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI4557761, Length=197, Percent_Identity=28.4263959390863, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI4504191, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI262231786, Length=141, Percent_Identity=36.1702127659575, Blast_Score=77, Evalue=1e-13, Organism=Escherichia coli, GI1789089, Length=264, Percent_Identity=27.2727272727273, Blast_Score=97, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17508445, Length=314, Percent_Identity=23.8853503184713, Blast_Score=91, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17534743, Length=366, Percent_Identity=22.1311475409836, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17539736, Length=263, Percent_Identity=23.9543726235741, Blast_Score=85, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17508447, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6319935, Length=275, Percent_Identity=29.8181818181818, Blast_Score=97, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6324482, Length=284, Percent_Identity=25.3521126760563, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320302, Length=212, Percent_Identity=29.2452830188679, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6321912, Length=261, Percent_Identity=25.2873563218391, Blast_Score=80, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320047, Length=212, Percent_Identity=29.7169811320755, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24584320, Length=185, Percent_Identity=29.1891891891892, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24664545, Length=227, Percent_Identity=27.3127753303965, Blast_Score=84, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005747 - InterPro: IPR000432 - InterPro: IPR007696 - InterPro: IPR002625 [H]
Pfam domain/function: PF05192 MutS_III; PF00488 MutS_V; PF01713 Smr [H]
EC number: NA
Molecular weight: Translated: 94725; Mature: 94725
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS50828 SMR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYPQNFEQKIGFDQIRQLLKDKCLSTLGEERVSDMSFTEQFEEVEEKLNQVTEFVRIIQ CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEDGFPDQFFFDVRPSLKRVRIEGMYLDEQELFDLRRSLETIRDIVRFLHRNEEEEENDV HCCCCCCCEEECCCCCCHHEEECCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PYPSLKRLAGDIAVFPQLIGKIDGILNKYGKIKDNASSELARIRRELSSTMGSISRSLNS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ILRNAQSEGYVDKDVAPTMRDGRLVIPVAPGLKRKIKGIVHDESASGKTVFIEPAEVVEA HHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEECCCCCCCEEEECCHHHHHH NNRIRELEGDERREIIRILTEFSNILRPSIPDILQSYEFLAEIDFIRAKSYFAIQTNSLK CCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC PTVEKEQLLDWTMAVHPLLQLSLAKHGKKVVPLDIELNQKQRILIISGPNAGGKSVCLKT CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHH VGLLQYMLQCGMLIPLHERSHAGMFSSIFIDIGDEQSIEDDLSTYSSHLTNMKIMMKSCN HHHHHHHHHCCCEEEECCCCCCCCEEHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC ERSLILIDEFGGGTEPQIGGAIAEAVLKRFNQKGTFGVITTHYQNLKHFAEDHEGVVNGA CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCHHHHHH MLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEDVIADASEIVGSEYINADKYLQDIV HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH RDKRYWEGKRQTIRQREKHMEDTIARYQTEMEELQKSRKEIIRQAKEEAERMLQESNARI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH ENTIRTIKEAQAEKEKTRLVRQELNDFRTSLETMTSKEQEEKIARKMEKLKEKQERKKNK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KNEPKTAASQTAATPKVIPITVGENVKIKGQTSVGQVMEINGKNATVAFGSIKTTVKLDR CCCCCHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEECCCCEEEEECCCCHHHHHHH LERSNAAPKTEGIAKSTFVSSQTHDQMYEKKLNFKQDIDVRGMRGDEALQAITYFVDDAI HHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LVGMDRVRILHGTGTGILRTLIRQYLSTVPGVSHYADEHVQFGGAGITVVDFD HCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEEECC >Mature Secondary Structure MIYPQNFEQKIGFDQIRQLLKDKCLSTLGEERVSDMSFTEQFEEVEEKLNQVTEFVRIIQ CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEDGFPDQFFFDVRPSLKRVRIEGMYLDEQELFDLRRSLETIRDIVRFLHRNEEEEENDV HCCCCCCCEEECCCCCCHHEEECCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PYPSLKRLAGDIAVFPQLIGKIDGILNKYGKIKDNASSELARIRRELSSTMGSISRSLNS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ILRNAQSEGYVDKDVAPTMRDGRLVIPVAPGLKRKIKGIVHDESASGKTVFIEPAEVVEA HHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEECCCCCCCEEEECCHHHHHH NNRIRELEGDERREIIRILTEFSNILRPSIPDILQSYEFLAEIDFIRAKSYFAIQTNSLK CCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC PTVEKEQLLDWTMAVHPLLQLSLAKHGKKVVPLDIELNQKQRILIISGPNAGGKSVCLKT CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHH VGLLQYMLQCGMLIPLHERSHAGMFSSIFIDIGDEQSIEDDLSTYSSHLTNMKIMMKSCN HHHHHHHHHCCCEEEECCCCCCCCEEHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC ERSLILIDEFGGGTEPQIGGAIAEAVLKRFNQKGTFGVITTHYQNLKHFAEDHEGVVNGA CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCHHHHHH MLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEDVIADASEIVGSEYINADKYLQDIV HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH RDKRYWEGKRQTIRQREKHMEDTIARYQTEMEELQKSRKEIIRQAKEEAERMLQESNARI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH ENTIRTIKEAQAEKEKTRLVRQELNDFRTSLETMTSKEQEEKIARKMEKLKEKQERKKNK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KNEPKTAASQTAATPKVIPITVGENVKIKGQTSVGQVMEINGKNATVAFGSIKTTVKLDR CCCCCHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEECCCCEEEEECCCCHHHHHHH LERSNAAPKTEGIAKSTFVSSQTHDQMYEKKLNFKQDIDVRGMRGDEALQAITYFVDDAI HHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LVGMDRVRILHGTGTGILRTLIRQYLSTVPGVSHYADEHVQFGGAGITVVDFD HCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA