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The map label for this gene is 29350044

Identifier: 29350044

GI number: 29350044

Start: 6072022

End: 6072615

Strand: Reverse

Name: 29350044

Synonym: BT_4636

Alternate gene names: NA

Gene position: 6072615-6072022 (Counterclockwise)

Preceding gene: 29350045

Following gene: 29350043

Centisome position: 97.0

GC content: 33.67

Gene sequence:

>594_bases
ATGTTCACTCAAGACGAAAGTTATATCAAATGGAAGTTATTTTTAGAAGGAGATGACCAGGCATACAGCTGGATATATAC
TCATTACATCCAAGTGCTCTATAATTATGGCTTACAAATCACTCCTGATTCTGAAATAGTGAAAGACTGCATTCAGGACG
TATTCGTAAAGATATATAAAGCCAAAAAGAAACTTACTGTACCTCAAAATCCTAAAGTATATTTAATGATTGCTTTAAAA
AATAACATCTATAATACTTTCAATCAAGAACGATTGCAAAAAAACTATGCTTTCAGTTTATACCAAACAGAAGAGCAGCT
TACTGTTAAAAACGAATTCATTGATCAGGAAGCCCGGCATGAAGAAATGAATAATATTAAAAGAATGATGAAAATCCTGA
CTCCCAGACAACGGGAAGTTATTTATTACCGCTTTATAGAAGAACTGAGTTACGATGATATTTGCCAGATAATGGGGCTC
AATTACCAATCGGCTTATAACCTTTTGCAACGCTCTCTACAAAAAATAAGAGAAGCCTATGGAGTCACTGGAATATGGAT
GTTAATACTCCATCAACTGACCTATTTACACTAA

Upstream 100 bases:

>100_bases
TCAGAAAAGAATTATTAAACATAAATCTTTTATTATTATTTTTTAATACTATCTTTGCTTTCATTGTGTAATGCGACAGG
CAAATTTAAGTAATAATTCT

Downstream 100 bases:

>100_bases
AAAATAAAAATCTCAAAAAAAATAAAGAGCAGTTGAGTAGATTTGTCAATTGAGATTGTCCTAAGATAAATCAACATTGA
AAATGGACATTAAAAACAAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor RpoE; Sigma-70 Region 4 Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MFTQDESYIKWKLFLEGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYKAKKKLTVPQNPKVYLMIALK
NNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARHEEMNNIKRMMKILTPRQREVIYYRFIEELSYDDICQIMGL
NYQSAYNLLQRSLQKIREAYGVTGIWMLILHQLTYLH

Sequences:

>Translated_197_residues
MFTQDESYIKWKLFLEGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYKAKKKLTVPQNPKVYLMIALK
NNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARHEEMNNIKRMMKILTPRQREVIYYRFIEELSYDDICQIMGL
NYQSAYNLLQRSLQKIREAYGVTGIWMLILHQLTYLH
>Mature_197_residues
MFTQDESYIKWKLFLEGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYKAKKKLTVPQNPKVYLMIALK
NNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARHEEMNNIKRMMKILTPRQREVIYYRFIEELSYDDICQIMGL
NYQSAYNLLQRSLQKIREAYGVTGIWMLILHQLTYLH

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23878; Mature: 23878

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTQDESYIKWKLFLEGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYK
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHH
AKKKLTVPQNPKVYLMIALKNNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARH
HHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHH
EEMNNIKRMMKILTPRQREVIYYRFIEELSYDDICQIMGLNYQSAYNLLQRSLQKIREAY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVTGIWMLILHQLTYLH
CCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFTQDESYIKWKLFLEGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYK
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHH
AKKKLTVPQNPKVYLMIALKNNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARH
HHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHH
EEMNNIKRMMKILTPRQREVIYYRFIEELSYDDICQIMGLNYQSAYNLLQRSLQKIREAY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVTGIWMLILHQLTYLH
CCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA