| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29350008
Identifier: 29350008
GI number: 29350008
Start: 6021228
End: 6022919
Strand: Reverse
Name: 29350008
Synonym: BT_4600
Alternate gene names: NA
Gene position: 6022919-6021228 (Counterclockwise)
Preceding gene: 29350009
Following gene: 29350005
Centisome position: 96.21
GC content: 41.84
Gene sequence:
>1692_bases ATGTCCAACTTTGAGGACGTAATCATGCAAAACCGCTATTACGTGGATAAAACAATGTATATTCCCTTATTGGAAGATCA AGCCAACTACCTGATATTCATTCGTCCTCGACGTTTCGGCAAGAGTCTGCTGCTTAGTATGCTCCGGTCATACTATGACC TTTCACAAAAAGATAAGTTCCAGCAACTATTCGGCAATCTCTGGATCGGTCAGCATACAACTCCGCTTCAAGGCAAATAC CAAATACTTTATCTTGACTTTTCCAAAATCGGTGGCAGTATTGATGAACTGCCACAAAGATTCGATTCTTACAGCGCTGT GCAGCTAGACGGTTTTCTCAACCGATATCGTGAATATTACACAGATGAATTCATAGAACGTTTCAGTGCTGCGGATAAAG GAATTGATAAACTTCACATCCTTGATGACGAAGCCAGGAGATTAGGTTATCCCCTATATCTTATTATAGATGAATACGAT AACTTCACCAATGTCGTCCTCAACGAAAAAGGCAACGAAATATATCGTGCCATCACCCACGCAAGCGGCTTCTACCGTGA TGCCTTCAAAAACTATAAAGGAATGTTCGACCGTATCTTTATGATCGGTGTCAGTCCCGTAACGCTAGACGACTTGTCGA GCGGTTATAATATCGGTTGGAACATCAGTACCAGTCCGGTATTTAACCAGATGCTGGGATTTTCTGAAAAAGATGTGCGC ACTATGTTCCAATATTACAAGGAAACAGGGCAACTGCATGGAGATATTGAAGAGATGATTCTGGAAATGAAGCCGTGGTA TGACAATTATTGTTTTGCACGTCAAAGCCTGAGTTCTGATCCCAAAATGTTCAACTGCGATATGGTACTTTACTACCTTC GGAATCGGATTCAGTTGGGAGCATCTCCCGAACAGATGATTGACCCTAATACCCGAACGGATTATAACAAGATGAAAAAA CTCATCCAACTGGATCGTCTTGACGGTAATCGCAAAGGCGTTATCAAACGCATTGCCGAAGAAGGAAAAATCATCACTAA CCTATTCCAGTCTTTTTCCGCAGACCAGATTACGAATCCGGAAATATTTCCCAGCCTGCTTTTTTACTATGGCATGCTGA CTATCATCGGAACACGTGGAAATCTGACTATCTTAGGAATCCCTAATACAAATGTCCGAAAACAATATTATGAATATATC TTGGAAGAATATCAAAACCACCACTATATCAATCTGATAGATATAGAGATACTCTTCAATAACATGGCTTTTGACGGTGA ATGGCGACCTGCATTGGAATTTATAGCCAAAGCTTATAAAGAGAATTCTTCCGTGCGCAGCAGCATTGAAGGAGAACGCA ATATTCAAGGATTCTTCACTGCCTATCTTAGCGTCAATGCATATTACTTGACGACACCTGAGGTAGAGTTGAACCATGGC TTTTGCGACATGTTTCTCATGCCTGACCTGCAACGCTATGCAGAAATTGCACACAGCTATATAGTAGAACTAAAATATCT GCCTAAAGAAAAGTTTGATGCCCAGTCTGCCGAACAATGGGAAGAAGCGGTGGCTCAAATTCATGGTTATGCCGCAAGTC CGAAAGTCCGTCTATTATGCCAAGGCACGCAACTTCACTGCATCGTAATACAGTTCTGCGGTTGGGAGATGGTTCGTATG GAAGAAGTCTGA
Upstream 100 bases:
>100_bases AACTATCTTTGATATTTGATTGTTTGAGGAGCTAGAATCTGAAAAACAAAAAGAAGCAAACTTTATAGTTATGGAAACAG TGAAACAAATACCATATGGC
Downstream 100 bases:
>100_bases CCTACAAGTTCTTGCTATGATGCCCCGCAAAGCGCATAAAAACTTGAGATAATCCTCCCTCCTGCCCTTGTAGCTGCACA AAATTAAATTCGCGCAACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSNFEDVIMQNRYYVDKTMYIPLLEDQANYLIFIRPRRFGKSLLLSMLRSYYDLSQKDKFQQLFGNLWIGQHTTPLQGKY QILYLDFSKIGGSIDELPQRFDSYSAVQLDGFLNRYREYYTDEFIERFSAADKGIDKLHILDDEARRLGYPLYLIIDEYD NFTNVVLNEKGNEIYRAITHASGFYRDAFKNYKGMFDRIFMIGVSPVTLDDLSSGYNIGWNISTSPVFNQMLGFSEKDVR TMFQYYKETGQLHGDIEEMILEMKPWYDNYCFARQSLSSDPKMFNCDMVLYYLRNRIQLGASPEQMIDPNTRTDYNKMKK LIQLDRLDGNRKGVIKRIAEEGKIITNLFQSFSADQITNPEIFPSLLFYYGMLTIIGTRGNLTILGIPNTNVRKQYYEYI LEEYQNHHYINLIDIEILFNNMAFDGEWRPALEFIAKAYKENSSVRSSIEGERNIQGFFTAYLSVNAYYLTTPEVELNHG FCDMFLMPDLQRYAEIAHSYIVELKYLPKEKFDAQSAEQWEEAVAQIHGYAASPKVRLLCQGTQLHCIVIQFCGWEMVRM EEV
Sequences:
>Translated_563_residues MSNFEDVIMQNRYYVDKTMYIPLLEDQANYLIFIRPRRFGKSLLLSMLRSYYDLSQKDKFQQLFGNLWIGQHTTPLQGKY QILYLDFSKIGGSIDELPQRFDSYSAVQLDGFLNRYREYYTDEFIERFSAADKGIDKLHILDDEARRLGYPLYLIIDEYD NFTNVVLNEKGNEIYRAITHASGFYRDAFKNYKGMFDRIFMIGVSPVTLDDLSSGYNIGWNISTSPVFNQMLGFSEKDVR TMFQYYKETGQLHGDIEEMILEMKPWYDNYCFARQSLSSDPKMFNCDMVLYYLRNRIQLGASPEQMIDPNTRTDYNKMKK LIQLDRLDGNRKGVIKRIAEEGKIITNLFQSFSADQITNPEIFPSLLFYYGMLTIIGTRGNLTILGIPNTNVRKQYYEYI LEEYQNHHYINLIDIEILFNNMAFDGEWRPALEFIAKAYKENSSVRSSIEGERNIQGFFTAYLSVNAYYLTTPEVELNHG FCDMFLMPDLQRYAEIAHSYIVELKYLPKEKFDAQSAEQWEEAVAQIHGYAASPKVRLLCQGTQLHCIVIQFCGWEMVRM EEV >Mature_562_residues SNFEDVIMQNRYYVDKTMYIPLLEDQANYLIFIRPRRFGKSLLLSMLRSYYDLSQKDKFQQLFGNLWIGQHTTPLQGKYQ ILYLDFSKIGGSIDELPQRFDSYSAVQLDGFLNRYREYYTDEFIERFSAADKGIDKLHILDDEARRLGYPLYLIIDEYDN FTNVVLNEKGNEIYRAITHASGFYRDAFKNYKGMFDRIFMIGVSPVTLDDLSSGYNIGWNISTSPVFNQMLGFSEKDVRT MFQYYKETGQLHGDIEEMILEMKPWYDNYCFARQSLSSDPKMFNCDMVLYYLRNRIQLGASPEQMIDPNTRTDYNKMKKL IQLDRLDGNRKGVIKRIAEEGKIITNLFQSFSADQITNPEIFPSLLFYYGMLTIIGTRGNLTILGIPNTNVRKQYYEYIL EEYQNHHYINLIDIEILFNNMAFDGEWRPALEFIAKAYKENSSVRSSIEGERNIQGFFTAYLSVNAYYLTTPEVELNHGF CDMFLMPDLQRYAEIAHSYIVELKYLPKEKFDAQSAEQWEEAVAQIHGYAASPKVRLLCQGTQLHCIVIQFCGWEMVRME EV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66100; Mature: 65969
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFEDVIMQNRYYVDKTMYIPLLEDQANYLIFIRPRRFGKSLLLSMLRSYYDLSQKDKF CCCHHHHHHCCCEEECCEEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHH QQLFGNLWIGQHTTPLQGKYQILYLDFSKIGGSIDELPQRFDSYSAVQLDGFLNRYREYY HHHHHCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHCCCCEEEHHHHHHHHHHHH TDEFIERFSAADKGIDKLHILDDEARRLGYPLYLIIDEYDNFTNVVLNEKGNEIYRAITH HHHHHHHHHHHHCCCCEEEEECHHHHHCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHH ASGFYRDAFKNYKGMFDRIFMIGVSPVTLDDLSSGYNIGWNISTSPVFNQMLGFSEKDVR CCHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCEECCCCHHHHHHHCCCHHHHH TMFQYYKETGQLHGDIEEMILEMKPWYDNYCFARQSLSSDPKMFNCDMVLYYLRNRIQLG HHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC ASPEQMIDPNTRTDYNKMKKLIQLDRLDGNRKGVIKRIAEEGKIITNLFQSFSADQITNP CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC EIFPSLLFYYGMLTIIGTRGNLTILGIPNTNVRKQYYEYILEEYQNHHYINLIDIEILFN HHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEE NMAFDGEWRPALEFIAKAYKENSSVRSSIEGERNIQGFFTAYLSVNAYYLTTPEVELNHG CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHEEEEEEEEEEEEECCCEEECCC FCDMFLMPDLQRYAEIAHSYIVELKYLPKEKFDAQSAEQWEEAVAQIHGYAASPKVRLLC EEEEHHCCCHHHHHHHHHHHHHHHEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEE QGTQLHCIVIQFCGWEMVRMEEV CCCCEEEEEEEECCCEEEEECCC >Mature Secondary Structure SNFEDVIMQNRYYVDKTMYIPLLEDQANYLIFIRPRRFGKSLLLSMLRSYYDLSQKDKF CCHHHHHHCCCEEECCEEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHH QQLFGNLWIGQHTTPLQGKYQILYLDFSKIGGSIDELPQRFDSYSAVQLDGFLNRYREYY HHHHHCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHCCCCEEEHHHHHHHHHHHH TDEFIERFSAADKGIDKLHILDDEARRLGYPLYLIIDEYDNFTNVVLNEKGNEIYRAITH HHHHHHHHHHHHCCCCEEEEECHHHHHCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHH ASGFYRDAFKNYKGMFDRIFMIGVSPVTLDDLSSGYNIGWNISTSPVFNQMLGFSEKDVR CCHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCEECCCCHHHHHHHCCCHHHHH TMFQYYKETGQLHGDIEEMILEMKPWYDNYCFARQSLSSDPKMFNCDMVLYYLRNRIQLG HHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCC ASPEQMIDPNTRTDYNKMKKLIQLDRLDGNRKGVIKRIAEEGKIITNLFQSFSADQITNP CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC EIFPSLLFYYGMLTIIGTRGNLTILGIPNTNVRKQYYEYILEEYQNHHYINLIDIEILFN HHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEE NMAFDGEWRPALEFIAKAYKENSSVRSSIEGERNIQGFFTAYLSVNAYYLTTPEVELNHG CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHEEEEEEEEEEEEECCCEEECCC FCDMFLMPDLQRYAEIAHSYIVELKYLPKEKFDAQSAEQWEEAVAQIHGYAASPKVRLLC EEEEHHCCCHHHHHHHHHHHHHHHEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEE QGTQLHCIVIQFCGWEMVRMEEV CCCCEEEEEEEECCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA