| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349135
Identifier: 29349135
GI number: 29349135
Start: 4837239
End: 4838720
Strand: Reverse
Name: 29349135
Synonym: BT_3727
Alternate gene names: NA
Gene position: 4838720-4837239 (Counterclockwise)
Preceding gene: 29349136
Following gene: 29349134
Centisome position: 77.29
GC content: 38.53
Gene sequence:
>1482_bases ATGAGAATAAAGTTTTTATCAATCATTGCGAGTTTTTTCATGGTGTCATTCGTTATTACGTCTTGCCTTGACAATGATAA CGAAGTCAATTATAGTCCGGATGCGACTATACGCGCATTTGAACTTGACACTATAGGTTATGGGGTAAACTATAAATTCA CAATTGACCAAGTTAGTCGTTTAATATATAATGTGGATTCACTGCCTGTCAATGCTGACACGATCATTAATAGTATTCTG ATCAAGACGCTGACAACAGCATCCGGTATCGTGACGATGAAAGATCAGAACGATCAGGATTCAATCGTTAATATTAACGA CTCTATTGACCTGACTAAGTATGTAAATGCAACCGAGAAAAACAACTTTCTGGTACTGAAGGTATGGGCACCGAATATGG AGGTTCAGAATGAGTATAAAGTTAATATACGGATGCATACGATGGTTCCCGATTCACTCAGTTGGGGAAAAGACCCTATA GCGAACAATCCCGTGAGGAACACTGCTGAAAAACAAAAGGTAGTAACGCTTGGGGACAAGATATTATTATTCGCTCAAAA CAATGAAATTTACAGTACAGCAATACCGGCAGGCTCTCCTACTGATCGTTTAAACTATGGTCAAAAATGGGATAAAGAAA CTACTGGCAAACTTCCTGATGGTGCTGATGTTACCTCCATTATCCGATTCGTTGACAAGTTATATTTACTTACTAAGAAT AAGGAAGTATATAATTCCAATGACGGTTTGACTTGGACAAAAGATGAAGTACTCAATTCCGATGGCGTTTCCGTTACTAA TCTGATAACCAGTTTTTCTGACAGTGATGGCAGTAACCATAAAAAGATAAATGGAATAGCAGGTATAGTAGAAATCAATG GAGAGAAATATTTCAGTTTTGCAGAGAAAGATGTAACATGGGAGAAAGATATAGACAAATTAACAGTTGTTCCTGCAGAG TTCCCGATAAACAACCTGTCAGCCGATGTATATGCAACTGAAAGCGGAACGTTGAATGCAATCGTTGTGGGTAATACAGA AGACGGTTTAGACAATGACACAGCTACAGTCGTTTGGGCTTCAGAAGATGGTAAAGCCTGGATTCCAATGGAGATTCCAT CAAATAACAACTGTCCGAAATTAGTAGACCCGTCTATTATACATTATAACGACGCATTTTACATTTGTGGAAAAGAAACT AAAGATGATGCTAAGGGATTCCAGAAATTCTATACCTCCCCGACATTACTTGTATGGAAAGGGGTAGACAGAATGTTCAT GCTTCCCGGAATTCTTCCTCCGGTGAAACTTGAAGGAGGAGTAACACAACATCCTTCTCTTCACGAATCCAGCTTCAAGG GAAAAGAAGTAAACTACACAATGGTAGTTGACAGAAACCATTATATATGGATGGTAGGTGGTCAAGGTATTGACAAAATC TGGCGTGGTAGAGTTAATAAACTCGGATTTCTAATACAGTAA
Upstream 100 bases:
>100_bases GCGTTATTATCTATAATTTTATATAAAACTTCCCCTTAATGTTCTATATCGGAAAAAATGTTCCTATTTTTGCAACTTGT AAATAAACACAATCTTTCAA
Downstream 100 bases:
>100_bases TAAGAAGTAGTTAAATACGAACCTTATAATCAAAACATGTCCTATATAGAGAAAATAGACAAAAATCGGATTCCCCAGCA CATAGCCATCATTATGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MRIKFLSIIASFFMVSFVITSCLDNDNEVNYSPDATIRAFELDTIGYGVNYKFTIDQVSRLIYNVDSLPVNADTIINSIL IKTLTTASGIVTMKDQNDQDSIVNINDSIDLTKYVNATEKNNFLVLKVWAPNMEVQNEYKVNIRMHTMVPDSLSWGKDPI ANNPVRNTAEKQKVVTLGDKILLFAQNNEIYSTAIPAGSPTDRLNYGQKWDKETTGKLPDGADVTSIIRFVDKLYLLTKN KEVYNSNDGLTWTKDEVLNSDGVSVTNLITSFSDSDGSNHKKINGIAGIVEINGEKYFSFAEKDVTWEKDIDKLTVVPAE FPINNLSADVYATESGTLNAIVVGNTEDGLDNDTATVVWASEDGKAWIPMEIPSNNNCPKLVDPSIIHYNDAFYICGKET KDDAKGFQKFYTSPTLLVWKGVDRMFMLPGILPPVKLEGGVTQHPSLHESSFKGKEVNYTMVVDRNHYIWMVGGQGIDKI WRGRVNKLGFLIQ
Sequences:
>Translated_493_residues MRIKFLSIIASFFMVSFVITSCLDNDNEVNYSPDATIRAFELDTIGYGVNYKFTIDQVSRLIYNVDSLPVNADTIINSIL IKTLTTASGIVTMKDQNDQDSIVNINDSIDLTKYVNATEKNNFLVLKVWAPNMEVQNEYKVNIRMHTMVPDSLSWGKDPI ANNPVRNTAEKQKVVTLGDKILLFAQNNEIYSTAIPAGSPTDRLNYGQKWDKETTGKLPDGADVTSIIRFVDKLYLLTKN KEVYNSNDGLTWTKDEVLNSDGVSVTNLITSFSDSDGSNHKKINGIAGIVEINGEKYFSFAEKDVTWEKDIDKLTVVPAE FPINNLSADVYATESGTLNAIVVGNTEDGLDNDTATVVWASEDGKAWIPMEIPSNNNCPKLVDPSIIHYNDAFYICGKET KDDAKGFQKFYTSPTLLVWKGVDRMFMLPGILPPVKLEGGVTQHPSLHESSFKGKEVNYTMVVDRNHYIWMVGGQGIDKI WRGRVNKLGFLIQ >Mature_493_residues MRIKFLSIIASFFMVSFVITSCLDNDNEVNYSPDATIRAFELDTIGYGVNYKFTIDQVSRLIYNVDSLPVNADTIINSIL IKTLTTASGIVTMKDQNDQDSIVNINDSIDLTKYVNATEKNNFLVLKVWAPNMEVQNEYKVNIRMHTMVPDSLSWGKDPI ANNPVRNTAEKQKVVTLGDKILLFAQNNEIYSTAIPAGSPTDRLNYGQKWDKETTGKLPDGADVTSIIRFVDKLYLLTKN KEVYNSNDGLTWTKDEVLNSDGVSVTNLITSFSDSDGSNHKKINGIAGIVEINGEKYFSFAEKDVTWEKDIDKLTVVPAE FPINNLSADVYATESGTLNAIVVGNTEDGLDNDTATVVWASEDGKAWIPMEIPSNNNCPKLVDPSIIHYNDAFYICGKET KDDAKGFQKFYTSPTLLVWKGVDRMFMLPGILPPVKLEGGVTQHPSLHESSFKGKEVNYTMVVDRNHYIWMVGGQGIDKI WRGRVNKLGFLIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55055; Mature: 55055
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIKFLSIIASFFMVSFVITSCLDNDNEVNYSPDATIRAFELDTIGYGVNYKFTIDQVSR CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEHHHHHH LIYNVDSLPVNADTIINSILIKTLTTASGIVTMKDQNDQDSIVNINDSIDLTKYVNATEK HHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCEEEEECCCCC NNFLVLKVWAPNMEVQNEYKVNIRMHTMVPDSLSWGKDPIANNPVRNTAEKQKVVTLGDK CCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCEEEEECCE ILLFAQNNEIYSTAIPAGSPTDRLNYGQKWDKETTGKLPDGADVTSIIRFVDKLYLLTKN EEEEEECCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECC KEVYNSNDGLTWTKDEVLNSDGVSVTNLITSFSDSDGSNHKKINGIAGIVEINGEKYFSF CEEEECCCCCEEEHHHHCCCCCCCHHHHHHHCCCCCCCCCEEECCEEEEEEECCCEEEEE AEKDVTWEKDIDKLTVVPAEFPINNLSADVYATESGTLNAIVVGNTEDGLDNDTATVVWA CCCCCCHHCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE SEDGKAWIPMEIPSNNNCPKLVDPSIIHYNDAFYICGKETKDDAKGFQKFYTSPTLLVWK CCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHCCCEEEEEC GVDRMFMLPGILPPVKLEGGVTQHPSLHESSFKGKEVNYTMVVDRNHYIWMVGGQGIDKI CCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCHHHH WRGRVNKLGFLIQ HHCCHHHCCEEEC >Mature Secondary Structure MRIKFLSIIASFFMVSFVITSCLDNDNEVNYSPDATIRAFELDTIGYGVNYKFTIDQVSR CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEHHHHHH LIYNVDSLPVNADTIINSILIKTLTTASGIVTMKDQNDQDSIVNINDSIDLTKYVNATEK HHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCEEEEECCCCC NNFLVLKVWAPNMEVQNEYKVNIRMHTMVPDSLSWGKDPIANNPVRNTAEKQKVVTLGDK CCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCEEEEECCE ILLFAQNNEIYSTAIPAGSPTDRLNYGQKWDKETTGKLPDGADVTSIIRFVDKLYLLTKN EEEEEECCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECC KEVYNSNDGLTWTKDEVLNSDGVSVTNLITSFSDSDGSNHKKINGIAGIVEINGEKYFSF CEEEECCCCCEEEHHHHCCCCCCCHHHHHHHCCCCCCCCCEEECCEEEEEEECCCEEEEE AEKDVTWEKDIDKLTVVPAEFPINNLSADVYATESGTLNAIVVGNTEDGLDNDTATVVWA CCCCCCHHCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE SEDGKAWIPMEIPSNNNCPKLVDPSIIHYNDAFYICGKETKDDAKGFQKFYTSPTLLVWK CCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHCCCEEEEEC GVDRMFMLPGILPPVKLEGGVTQHPSLHESSFKGKEVNYTMVVDRNHYIWMVGGQGIDKI CCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCHHHH WRGRVNKLGFLIQ HHCCHHHCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA