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The map label for this gene is ydgJ [C]

Identifier: 29348989

GI number: 29348989

Start: 4635419

End: 4636762

Strand: Reverse

Name: ydgJ [C]

Synonym: BT_3581

Alternate gene names: 29348989

Gene position: 4636762-4635419 (Counterclockwise)

Preceding gene: 29348990

Following gene: 29348988

Centisome position: 74.07

GC content: 45.68

Gene sequence:

>1344_bases
ATGACAACAAGAAGAGATTTTATCAAAAAAACAGTTGCAGGCACGGCCGCCCTTTCCTTGGGAAGCATTATTCCCGGCTT
CGGTTCAAATAGTTATCAGGAAATCCTGGGTGCGAACGAAAAAATACGAATCGGAGTCATTGGTGTAAACTCCAGAGGTA
ATGCCTTGGCACAAGGATTTGCCAAGATGAAAGGTTGTGAAGTTACTTACCTTTGTGATGTTGATTCAAGAGCACTTGAA
AGATGTCAGGCAGATATTCATAAAATAAGCGGACGCACTCCCAAAGGAGAAAAAGATATCCGCAAAATGCTGGAATCGGA
CGATTTTGAGGCGGTAGTCATTGCCACGCCTGACCACTGGCATGGCAAAGCAGCCATTATGGCTATGCAAGCAGGAAAGC
ATGTTTATCTGGAAAAACCGACCAGCCACAATCCGGCAGAGAATGAAATGTTAGTCAGGGCGACGCTTAAATATAACCGG
ATTGTCCAAGTCGGCAACCAGCGCCGTTCGTGGCCGAACGTTATCAAAGCAATAGAAGAGATTAAGTCTGGGGCAATCGG
GAAAGTAAGATATGCCAAGTCCTGGTATGTCAACAACCGTCCTTCCATCGGCACAGGAAAAGTGGTTCCTGTACCCGACT
ATCTGGACTGGGATTTATGGCAAGGTCCTGCACCACGGGTGCCCAATTTTAAAGATAATTATATTCATTATAACTGGCAC
TGGTTCTGGAACTGGGGTACCGGTGAAGCATTGAATAACGGAACTCATTTCGTTGATATCCTCCGTTGGGGGCTGGGCGT
TGATTATCCGACAAAGGTAGATTCTGTCGGAGGACGTTATCGCTTTCAGGACGACTGGCAAACTCCGGATACACAACTCA
TTACTTTTCAGTTCGGCGACGAAGCATCCTGCTCTTGGGAAGGACGTAGTTGCAACAGCACACCGGTAGACGGATACGGA
GTAGGTACCGCTTTCTACGGAGAAACAGGCACCCTTTTCATCAGTGGAGGCAATGAGTACAAAATAACAGACTTACAAGG
GAAAGTAATCAAAGATGTAAAAAGTAACTTGAAGTTTGAAACTGGTAATTTGCTAAATCCATCGGAAAAGCTGGATGCTT
ATCACTTCGAAAACTGGTTTGACGCCATCCGCAAAGGTGGTAAGCTGAATTCCGGCATTGTAGATGCCTGCATCAGTACT
CAGTTAGTACAGTTAGGCAATATCGCGCAGCGTGTAGGTCATTCTTTAGATATTGATCCGGGAAGCGGACGTATTCTGAA
TGATCTGGAAGCTAACAAGCTCTGGGGCAGAGAATACGAAAAAGGTTGGGAAATACGGGTATAA

Upstream 100 bases:

>100_bases
AAAAAAGAAGTAACAGCTTTACGTTTTTTGAAGATTGATTGACGGAAAAGAAGTCTGATATCAGTTAATAACGGCTTAAC
TTTGAGGAAAAATAAACACT

Downstream 100 bases:

>100_bases
CCCCGCCCTTCTCTTCCTCGTTTTTTCATTAGGTTATAGTTTTGTTGGAGGGTATGTCAAAAGTAACTAAACTCCCCTCC
TTCGGGAAGGAAGGGTGGCT

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MTTRRDFIKKTVAGTAALSLGSIIPGFGSNSYQEILGANEKIRIGVIGVNSRGNALAQGFAKMKGCEVTYLCDVDSRALE
RCQADIHKISGRTPKGEKDIRKMLESDDFEAVVIATPDHWHGKAAIMAMQAGKHVYLEKPTSHNPAENEMLVRATLKYNR
IVQVGNQRRSWPNVIKAIEEIKSGAIGKVRYAKSWYVNNRPSIGTGKVVPVPDYLDWDLWQGPAPRVPNFKDNYIHYNWH
WFWNWGTGEALNNGTHFVDILRWGLGVDYPTKVDSVGGRYRFQDDWQTPDTQLITFQFGDEASCSWEGRSCNSTPVDGYG
VGTAFYGETGTLFISGGNEYKITDLQGKVIKDVKSNLKFETGNLLNPSEKLDAYHFENWFDAIRKGGKLNSGIVDACIST
QLVQLGNIAQRVGHSLDIDPGSGRILNDLEANKLWGREYEKGWEIRV

Sequences:

>Translated_447_residues
MTTRRDFIKKTVAGTAALSLGSIIPGFGSNSYQEILGANEKIRIGVIGVNSRGNALAQGFAKMKGCEVTYLCDVDSRALE
RCQADIHKISGRTPKGEKDIRKMLESDDFEAVVIATPDHWHGKAAIMAMQAGKHVYLEKPTSHNPAENEMLVRATLKYNR
IVQVGNQRRSWPNVIKAIEEIKSGAIGKVRYAKSWYVNNRPSIGTGKVVPVPDYLDWDLWQGPAPRVPNFKDNYIHYNWH
WFWNWGTGEALNNGTHFVDILRWGLGVDYPTKVDSVGGRYRFQDDWQTPDTQLITFQFGDEASCSWEGRSCNSTPVDGYG
VGTAFYGETGTLFISGGNEYKITDLQGKVIKDVKSNLKFETGNLLNPSEKLDAYHFENWFDAIRKGGKLNSGIVDACIST
QLVQLGNIAQRVGHSLDIDPGSGRILNDLEANKLWGREYEKGWEIRV
>Mature_446_residues
TTRRDFIKKTVAGTAALSLGSIIPGFGSNSYQEILGANEKIRIGVIGVNSRGNALAQGFAKMKGCEVTYLCDVDSRALER
CQADIHKISGRTPKGEKDIRKMLESDDFEAVVIATPDHWHGKAAIMAMQAGKHVYLEKPTSHNPAENEMLVRATLKYNRI
VQVGNQRRSWPNVIKAIEEIKSGAIGKVRYAKSWYVNNRPSIGTGKVVPVPDYLDWDLWQGPAPRVPNFKDNYIHYNWHW
FWNWGTGEALNNGTHFVDILRWGLGVDYPTKVDSVGGRYRFQDDWQTPDTQLITFQFGDEASCSWEGRSCNSTPVDGYGV
GTAFYGETGTLFISGGNEYKITDLQGKVIKDVKSNLKFETGNLLNPSEKLDAYHFENWFDAIRKGGKLNSGIVDACISTQ
LVQLGNIAQRVGHSLDIDPGSGRILNDLEANKLWGREYEKGWEIRV

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 49985; Mature: 49854

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRRDFIKKTVAGTAALSLGSIIPGFGSNSYQEILGANEKIRIGVIGVNSRGNALAQGF
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEEEEECCCCCHHHHHH
AKMKGCEVTYLCDVDSRALERCQADIHKISGRTPKGEKDIRKMLESDDFEAVVIATPDHW
HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCC
HGKAAIMAMQAGKHVYLEKPTSHNPAENEMLVRATLKYNRIVQVGNQRRSWPNVIKAIEE
CCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHH
IKSGAIGKVRYAKSWYVNNRPSIGTGKVVPVPDYLDWDLWQGPAPRVPNFKDNYIHYNWH
HHCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
WFWNWGTGEALNNGTHFVDILRWGLGVDYPTKVDSVGGRYRFQDDWQTPDTQLITFQFGD
EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCEEEECCCCCCCCCEEEEEEECC
EASCSWEGRSCNSTPVDGYGVGTAFYGETGTLFISGGNEYKITDLQGKVIKDVKSNLKFE
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHCCEEC
TGNLLNPSEKLDAYHFENWFDAIRKGGKLNSGIVDACISTQLVQLGNIAQRVGHSLDIDP
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
GSGRILNDLEANKLWGREYEKGWEIRV
CCCCEECCCCHHHHCCCHHCCCCCCCC
>Mature Secondary Structure 
TTRRDFIKKTVAGTAALSLGSIIPGFGSNSYQEILGANEKIRIGVIGVNSRGNALAQGF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEEEEECCCCCHHHHHH
AKMKGCEVTYLCDVDSRALERCQADIHKISGRTPKGEKDIRKMLESDDFEAVVIATPDHW
HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCC
HGKAAIMAMQAGKHVYLEKPTSHNPAENEMLVRATLKYNRIVQVGNQRRSWPNVIKAIEE
CCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHH
IKSGAIGKVRYAKSWYVNNRPSIGTGKVVPVPDYLDWDLWQGPAPRVPNFKDNYIHYNWH
HHCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
WFWNWGTGEALNNGTHFVDILRWGLGVDYPTKVDSVGGRYRFQDDWQTPDTQLITFQFGD
EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCEEEECCCCCCCCCEEEEEEECC
EASCSWEGRSCNSTPVDGYGVGTAFYGETGTLFISGGNEYKITDLQGKVIKDVKSNLKFE
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHCCEEC
TGNLLNPSEKLDAYHFENWFDAIRKGGKLNSGIVDACISTQLVQLGNIAQRVGHSLDIDP
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
GSGRILNDLEANKLWGREYEKGWEIRV
CCCCEECCCCHHHHCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA