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The map label for this gene is ydeC [H]

Identifier: 29348531

GI number: 29348531

Start: 3979378

End: 3980247

Strand: Reverse

Name: ydeC [H]

Synonym: BT_3122

Alternate gene names: 29348531

Gene position: 3980247-3979378 (Counterclockwise)

Preceding gene: 29348532

Following gene: 29348530

Centisome position: 63.58

GC content: 42.41

Gene sequence:

>870_bases
ATGAGAAAAATGATGAATGAGCAGCTTCCTATATCGAAGTCATCTCCTCTGAAAGCTCGTTTTTATGATTATCCTTATTT
TACTTACCCGTGGCATTTTCATACGGAGTATGAGATTATCTATGTCAAGGAGGGCACAGGAATGCGTTTTGTAGGAAATA
ACGCGGAGAAATACGCTGATGGTGATATTCTTCTGCTAGGCTCCGATTTGCCTCATTATATGAAGAGCGATGAGGTGTAT
CGGCAAGAAGGCAGTACGCTTCGGACAACAGGGACCATCATTCAGTTTGAAAAGGACTTCATGCACCACGCTTTCAATTA
TTATCCCCATTTTATGAAGATAAAGAACCTGCTTGAAGAGGCGCAACGGGGGATTTACTTTCCCGCAGGATGCTCCCCGC
GGCTGGTTGATTTGCTTGAATCGATTCCGGTGGAGACAGGAGTCGATCAGATTACTTCTTTCCTGCAACTTCTGAAAGAA
ATGGCAAACGTCGCTTCACGGTCTGTGCTATCGACTTCCGATTTTGAAAATGATATTATCTACGACGGATCGAGAATAGA
CAAAATCATAGTTTACCTGAATAAGAACTATACACGGCAGATTGACCTGAATGAAATATCTTCTCTGGCAGCTATGAATC
CTGCTGCATTCTGCCGCTTCTTCAAGAGCAAAACGGGGAAATCATTCAAGAATTACATATTGGAGATGCGGATAGGATAT
GCGTGTAAACTCTTGCTCATGGGCGATATGAATATTTCGCAGATCAGTGTGGAGTGCGGATTTGATACGATTTCTCATTT
TAATAAGTCGTTCAAGAAGCATACCGGATTCACTCCGTCTTACTATAAAAGGATGATGCTGGCTGAATAG

Upstream 100 bases:

>100_bases
TGAGAAGATTACGTTAGTCGCTTTAGGCGGCGCAGCTTGTATTGTCTGCGGGGTATATTGGGCTGAAAAGAAATAGAGTA
GATAAGAAATAGAGTAGATT

Downstream 100 bases:

>100_bases
AAATGAATGAAAGAAAGAGGCAAACGGGACGTATGGACATAAAAAAAGGGTCAACGCCTTGACCCAACCTTTGTTAACCT
TAAATCTAATACTATGAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRKMMNEQLPISKSSPLKARFYDYPYFTYPWHFHTEYEIIYVKEGTGMRFVGNNAEKYADGDILLLGSDLPHYMKSDEVY
RQEGSTLRTTGTIIQFEKDFMHHAFNYYPHFMKIKNLLEEAQRGIYFPAGCSPRLVDLLESIPVETGVDQITSFLQLLKE
MANVASRSVLSTSDFENDIIYDGSRIDKIIVYLNKNYTRQIDLNEISSLAAMNPAAFCRFFKSKTGKSFKNYILEMRIGY
ACKLLLMGDMNISQISVECGFDTISHFNKSFKKHTGFTPSYYKRMMLAE

Sequences:

>Translated_289_residues
MRKMMNEQLPISKSSPLKARFYDYPYFTYPWHFHTEYEIIYVKEGTGMRFVGNNAEKYADGDILLLGSDLPHYMKSDEVY
RQEGSTLRTTGTIIQFEKDFMHHAFNYYPHFMKIKNLLEEAQRGIYFPAGCSPRLVDLLESIPVETGVDQITSFLQLLKE
MANVASRSVLSTSDFENDIIYDGSRIDKIIVYLNKNYTRQIDLNEISSLAAMNPAAFCRFFKSKTGKSFKNYILEMRIGY
ACKLLLMGDMNISQISVECGFDTISHFNKSFKKHTGFTPSYYKRMMLAE
>Mature_289_residues
MRKMMNEQLPISKSSPLKARFYDYPYFTYPWHFHTEYEIIYVKEGTGMRFVGNNAEKYADGDILLLGSDLPHYMKSDEVY
RQEGSTLRTTGTIIQFEKDFMHHAFNYYPHFMKIKNLLEEAQRGIYFPAGCSPRLVDLLESIPVETGVDQITSFLQLLKE
MANVASRSVLSTSDFENDIIYDGSRIDKIIVYLNKNYTRQIDLNEISSLAAMNPAAFCRFFKSKTGKSFKNYILEMRIGY
ACKLLLMGDMNISQISVECGFDTISHFNKSFKKHTGFTPSYYKRMMLAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33535; Mature: 33535

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMMNEQLPISKSSPLKARFYDYPYFTYPWHFHTEYEIIYVKEGTGMRFVGNNAEKYAD
CCCCCCCCCCCCCCCCCEEEEECCCCEECCEEECCCEEEEEEECCCCEEEECCCCCCCCC
GDILLLGSDLPHYMKSDEVYRQEGSTLRTTGTIIQFEKDFMHHAFNYYPHFMKIKNLLEE
CCEEEECCCCCHHHCCCHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
AQRGIYFPAGCSPRLVDLLESIPVETGVDQITSFLQLLKEMANVASRSVLSTSDFENDII
HHCCEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
YDGSRIDKIIVYLNKNYTRQIDLNEISSLAAMNPAAFCRFFKSKTGKSFKNYILEMRIGY
ECCCCEEEEEEEECCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
ACKLLLMGDMNISQISVECGFDTISHFNKSFKKHTGFTPSYYKRMMLAE
EEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRKMMNEQLPISKSSPLKARFYDYPYFTYPWHFHTEYEIIYVKEGTGMRFVGNNAEKYAD
CCCCCCCCCCCCCCCCCEEEEECCCCEECCEEECCCEEEEEEECCCCEEEECCCCCCCCC
GDILLLGSDLPHYMKSDEVYRQEGSTLRTTGTIIQFEKDFMHHAFNYYPHFMKIKNLLEE
CCEEEECCCCCHHHCCCHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
AQRGIYFPAGCSPRLVDLLESIPVETGVDQITSFLQLLKEMANVASRSVLSTSDFENDII
HHCCEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
YDGSRIDKIIVYLNKNYTRQIDLNEISSLAAMNPAAFCRFFKSKTGKSFKNYILEMRIGY
ECCCCEEEEEEEECCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
ACKLLLMGDMNISQISVECGFDTISHFNKSFKKHTGFTPSYYKRMMLAE
EEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]