Click here to switch to the map view.

The map label for this gene is 29348505

Identifier: 29348505

GI number: 29348505

Start: 3932466

End: 3934595

Strand: Reverse

Name: 29348505

Synonym: BT_3096

Alternate gene names: NA

Gene position: 3934595-3932466 (Counterclockwise)

Preceding gene: 29348509

Following gene: 29348504

Centisome position: 62.85

GC content: 41.78

Gene sequence:

>2130_bases
ATGCTTCCTTATATTGAACATGATGTTACGAATGTTTATTCTTTGAATTCTCTACATTTGTATCGTAAACCAAATGAAAA
GACCATGAAAACAAAATTTTGCAGAACGGCAGTGTATTGCCTGTGCTGTTTTATGTTTATCCAGCCGATAACAGGAAGCC
AGGTAAATGATACTCATGAGGGTGTTTTGCATATCGACAAACAGAAAACACGCAAAGTAAGCCGTGTCCAATATGGGTTC
CATTATGAAGAGATTGGTATGATAGGAGAAGGTGCCTTGCATGCCGAACTGGTACGCAACCGTTCATTCGAAGAAGCAAC
TCCACCCGCAGATCTGGCGGTCAAAAATGGGCTTTATCAGAATGTACCGAATCCGCGTGGAAAAAACAAAGATGTATTTC
ATGTAGACCCTCTGATCGGATGGAACACTTATCCTCTGTCTTATACTCCCATTTTCATTAGCCGTACAGAAGAAAATCCT
CTGAATAAGGAGAATAAGTATTCAATGCTGGTCAACGTGACTGAAGATATTGCAAACAATCCGGAGGCAATGATTCTAAA
TCGGGGATATTACGGTATGAATCTACGAAAGGAGGTATCTTATCATCTTTCCATGTATATAAAAAGCAAAAATTATACAG
CTCTTCTTCAAGTTATGCTGGTAGACGAACAAGGTAAACCGGTCAGTACTCAGCTTGTTTTGGATGTAAAGGGTAAAGAG
TGGACGAAACTTACCGGAACATTAAAACCTGATAAAGATGTCAAACGGGGGATGCTTGCCATTCAGCCGTTAGGTAAAGG
GCAATTCCAACTGGATGTCGTCTCTTTATTCCCTTCTGATACATGGGACAATGGAAAATCAGTTTTTCGGGCGGATATTA
TGCAGAACTTGAAAGAATATGCACCGGATTTCATTCGTTTTCCCGGCGGATGTATTGTGCATGGGGTGAATGAAGCTACC
ATGTACCACTGGAAAAAGACAATAGGTCCCATTGAAAATCGACCGGGACAATGGAGTAAATGGGCGCCTTACTACCGTAC
AGATGGAATTGGTTATCATGAGTTTTACGAATTGTGCGAATATTTGGGAGCAGATGCTATGTACGTAATCCCTACAGGGA
TGATCTGTACAGGTTGGGTAAAGCAAAGTTCTCCCTGGAATTTCATTCAACCGGACGTTGATCTGGATGCTTATATTCAG
GATGCACTGGATGCCATAGAATACGCAATCGGTCCGGAAACCAGCAAATGGGGGGCTTTACGTGTAAAGAACGGACATCC
GAAGCCTTTCCCTCTAAAGTACATTGAAATTGGAAACGAAGACTTCGGACCTGTTTATTGGGAACGTTACGAGAAGATTT
ATCAAGCGTTACACAGACAGTACCCCGACTTGATATACATAGCCAACAGTATCATAGGCAAAGAAAATGACGACAAACGG
ATTGATATTGCGAAGTTTGTGAACCCGAAGAATGTGAAGGTATTCGATGAACACCATTATCAACCTGTCGAATGGGCTTG
CAAGCAGCATTACCGTTTTGACAACTATGAACGGGGAATAGCGGATTTGTTTGTTGGAGAATTGGGCATTGACGGGAAGT
ATCCCTATAATCTGTTAGCCAGCGGAGCGGTGCGAATGTCTCTTGAACGTAATGGAGACTTGAATCCATTATTGGCAGAA
CGTCCGGTGATGCGCCATTGGGATTTTTCAGAGCATCGTCAGTTGCACTCTATGCTAATCAATGGGGTAGATTGCAGCAT
CAGGACATCTTTCTATTATTTATCAAAAATGTTCAGAGACCACACTTTCGATGTATGCCTGGATGCTGGGATTCAGGGGA
TGAAGGGTTTGCAGAATGTCTTTGTTACGATGGGATATGATAGTGAAAGTAAAGAATATATCCTGAAACTGATCAATTTG
AGAAAACAGGAGGTGGTACTTCAAACAGCAGTGAAAGGATTTGGGAAAAAGATACAGGCACAAAAAATAACATTGAGTCT
GGAACCCGGCAAGAATAACACTCCGGAAATGCCGGATGCAGTAAAGCCAGTTCAGTCGACCGTAACACTGGACTTAAATA
AAGATTTGCAGCTTGAGGCTTCTTCAATGATTGTATACCGTTTTAAATAA

Upstream 100 bases:

>100_bases
CGCTCAAAGATAGTCTTTTTTCTATCGGTTTTTCTAGTACAAATGTATATTCCATTAGAAATTATGTGCACAATCGAAGC
TTTATGGGCTCAAACAATAC

Downstream 100 bases:

>100_bases
GATAAATATGAGAAATGCAGCGTTTTGTATTACGGGATTGGCATTACAGGGGTTTGTCTATGTCATTGATGGCACAAACC
GACAAGCCGAATATTGTAAT

Product: alpha-L-arabinofuranosidase A

Products: NA

Alternate protein names: Alpha-N-arabinofuranosidase I; Alpha-N-AFase I; Arabinosidase I [H]

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MLPYIEHDVTNVYSLNSLHLYRKPNEKTMKTKFCRTAVYCLCCFMFIQPITGSQVNDTHEGVLHIDKQKTRKVSRVQYGF
HYEEIGMIGEGALHAELVRNRSFEEATPPADLAVKNGLYQNVPNPRGKNKDVFHVDPLIGWNTYPLSYTPIFISRTEENP
LNKENKYSMLVNVTEDIANNPEAMILNRGYYGMNLRKEVSYHLSMYIKSKNYTALLQVMLVDEQGKPVSTQLVLDVKGKE
WTKLTGTLKPDKDVKRGMLAIQPLGKGQFQLDVVSLFPSDTWDNGKSVFRADIMQNLKEYAPDFIRFPGGCIVHGVNEAT
MYHWKKTIGPIENRPGQWSKWAPYYRTDGIGYHEFYELCEYLGADAMYVIPTGMICTGWVKQSSPWNFIQPDVDLDAYIQ
DALDAIEYAIGPETSKWGALRVKNGHPKPFPLKYIEIGNEDFGPVYWERYEKIYQALHRQYPDLIYIANSIIGKENDDKR
IDIAKFVNPKNVKVFDEHHYQPVEWACKQHYRFDNYERGIADLFVGELGIDGKYPYNLLASGAVRMSLERNGDLNPLLAE
RPVMRHWDFSEHRQLHSMLINGVDCSIRTSFYYLSKMFRDHTFDVCLDAGIQGMKGLQNVFVTMGYDSESKEYILKLINL
RKQEVVLQTAVKGFGKKIQAQKITLSLEPGKNNTPEMPDAVKPVQSTVTLDLNKDLQLEASSMIVYRFK

Sequences:

>Translated_709_residues
MLPYIEHDVTNVYSLNSLHLYRKPNEKTMKTKFCRTAVYCLCCFMFIQPITGSQVNDTHEGVLHIDKQKTRKVSRVQYGF
HYEEIGMIGEGALHAELVRNRSFEEATPPADLAVKNGLYQNVPNPRGKNKDVFHVDPLIGWNTYPLSYTPIFISRTEENP
LNKENKYSMLVNVTEDIANNPEAMILNRGYYGMNLRKEVSYHLSMYIKSKNYTALLQVMLVDEQGKPVSTQLVLDVKGKE
WTKLTGTLKPDKDVKRGMLAIQPLGKGQFQLDVVSLFPSDTWDNGKSVFRADIMQNLKEYAPDFIRFPGGCIVHGVNEAT
MYHWKKTIGPIENRPGQWSKWAPYYRTDGIGYHEFYELCEYLGADAMYVIPTGMICTGWVKQSSPWNFIQPDVDLDAYIQ
DALDAIEYAIGPETSKWGALRVKNGHPKPFPLKYIEIGNEDFGPVYWERYEKIYQALHRQYPDLIYIANSIIGKENDDKR
IDIAKFVNPKNVKVFDEHHYQPVEWACKQHYRFDNYERGIADLFVGELGIDGKYPYNLLASGAVRMSLERNGDLNPLLAE
RPVMRHWDFSEHRQLHSMLINGVDCSIRTSFYYLSKMFRDHTFDVCLDAGIQGMKGLQNVFVTMGYDSESKEYILKLINL
RKQEVVLQTAVKGFGKKIQAQKITLSLEPGKNNTPEMPDAVKPVQSTVTLDLNKDLQLEASSMIVYRFK
>Mature_709_residues
MLPYIEHDVTNVYSLNSLHLYRKPNEKTMKTKFCRTAVYCLCCFMFIQPITGSQVNDTHEGVLHIDKQKTRKVSRVQYGF
HYEEIGMIGEGALHAELVRNRSFEEATPPADLAVKNGLYQNVPNPRGKNKDVFHVDPLIGWNTYPLSYTPIFISRTEENP
LNKENKYSMLVNVTEDIANNPEAMILNRGYYGMNLRKEVSYHLSMYIKSKNYTALLQVMLVDEQGKPVSTQLVLDVKGKE
WTKLTGTLKPDKDVKRGMLAIQPLGKGQFQLDVVSLFPSDTWDNGKSVFRADIMQNLKEYAPDFIRFPGGCIVHGVNEAT
MYHWKKTIGPIENRPGQWSKWAPYYRTDGIGYHEFYELCEYLGADAMYVIPTGMICTGWVKQSSPWNFIQPDVDLDAYIQ
DALDAIEYAIGPETSKWGALRVKNGHPKPFPLKYIEIGNEDFGPVYWERYEKIYQALHRQYPDLIYIANSIIGKENDDKR
IDIAKFVNPKNVKVFDEHHYQPVEWACKQHYRFDNYERGIADLFVGELGIDGKYPYNLLASGAVRMSLERNGDLNPLLAE
RPVMRHWDFSEHRQLHSMLINGVDCSIRTSFYYLSKMFRDHTFDVCLDAGIQGMKGLQNVFVTMGYDSESKEYILKLINL
RKQEVVLQTAVKGFGKKIQAQKITLSLEPGKNNTPEMPDAVKPVQSTVTLDLNKDLQLEASSMIVYRFK

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM-cenC (cenC-type cellulose-binding) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR003305
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR017853 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C; PF02018 CBM_4_9 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 81528; Mature: 81528

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPYIEHDVTNVYSLNSLHLYRKPNEKTMKTKFCRTAVYCLCCFMFIQPITGSQVNDTHE
CCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GVLHIDKQKTRKVSRVQYGFHYEEIGMIGEGALHAELVRNRSFEEATPPADLAVKNGLYQ
CEEEECHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCHHH
NVPNPRGKNKDVFHVDPLIGWNTYPLSYTPIFISRTEENPLNKENKYSMLVNVTEDIANN
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEHHHHCCC
PEAMILNRGYYGMNLRKEVSYHLSMYIKSKNYTALLQVMLVDEQGKPVSTQLVLDVKGKE
CCEEEEECCCCCCCHHHHHEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEECCCC
WTKLTGTLKPDKDVKRGMLAIQPLGKGQFQLDVVSLFPSDTWDNGKSVFRADIMQNLKEY
EEEEECCCCCCHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
APDFIRFPGGCIVHGVNEATMYHWKKTIGPIENRPGQWSKWAPYYRTDGIGYHEFYELCE
CCHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YLGADAMYVIPTGMICTGWVKQSSPWNFIQPDVDLDAYIQDALDAIEYAIGPETSKWGAL
HHCCCEEEEECCCEEEECEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
RVKNGHPKPFPLKYIEIGNEDFGPVYWERYEKIYQALHRQYPDLIYIANSIIGKENDDKR
EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCE
IDIAKFVNPKNVKVFDEHHYQPVEWACKQHYRFDNYERGIADLFVGELGIDGKYPYNLLA
EEHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCHHCCHHHHHHHHCCCCCCCCHHHHC
SGAVRMSLERNGDLNPLLAERPVMRHWDFSEHRQLHSMLINGVDCSIRTSFYYLSKMFRD
CCEEEEEECCCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
HTFDVCLDAGIQGMKGLQNVFVTMGYDSESKEYILKLINLRKQEVVLQTAVKGFGKKIQA
CCHHHHHHHCCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
QKITLSLEPGKNNTPEMPDAVKPVQSTVTLDLNKDLQLEASSMIVYRFK
EEEEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEECEEEEEEEC
>Mature Secondary Structure
MLPYIEHDVTNVYSLNSLHLYRKPNEKTMKTKFCRTAVYCLCCFMFIQPITGSQVNDTHE
CCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GVLHIDKQKTRKVSRVQYGFHYEEIGMIGEGALHAELVRNRSFEEATPPADLAVKNGLYQ
CEEEECHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCHHH
NVPNPRGKNKDVFHVDPLIGWNTYPLSYTPIFISRTEENPLNKENKYSMLVNVTEDIANN
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEHHHHCCC
PEAMILNRGYYGMNLRKEVSYHLSMYIKSKNYTALLQVMLVDEQGKPVSTQLVLDVKGKE
CCEEEEECCCCCCCHHHHHEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEECCCC
WTKLTGTLKPDKDVKRGMLAIQPLGKGQFQLDVVSLFPSDTWDNGKSVFRADIMQNLKEY
EEEEECCCCCCHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
APDFIRFPGGCIVHGVNEATMYHWKKTIGPIENRPGQWSKWAPYYRTDGIGYHEFYELCE
CCHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YLGADAMYVIPTGMICTGWVKQSSPWNFIQPDVDLDAYIQDALDAIEYAIGPETSKWGAL
HHCCCEEEEECCCEEEECEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
RVKNGHPKPFPLKYIEIGNEDFGPVYWERYEKIYQALHRQYPDLIYIANSIIGKENDDKR
EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCE
IDIAKFVNPKNVKVFDEHHYQPVEWACKQHYRFDNYERGIADLFVGELGIDGKYPYNLLA
EEHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCHHCCHHHHHHHHCCCCCCCCHHHHC
SGAVRMSLERNGDLNPLLAERPVMRHWDFSEHRQLHSMLINGVDCSIRTSFYYLSKMFRD
CCEEEEEECCCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
HTFDVCLDAGIQGMKGLQNVFVTMGYDSESKEYILKLINLRKQEVVLQTAVKGFGKKIQA
CCHHHHHHHCCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
QKITLSLEPGKNNTPEMPDAVKPVQSTVTLDLNKDLQLEASSMIVYRFK
EEEEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEECEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10657233 [H]