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The map label for this gene is kdgF [H]

Identifier: 29348490

GI number: 29348490

Start: 3906250

End: 3906591

Strand: Reverse

Name: kdgF [H]

Synonym: BT_3081

Alternate gene names: 29348490

Gene position: 3906591-3906250 (Counterclockwise)

Preceding gene: 29348491

Following gene: 29348489

Centisome position: 62.4

GC content: 50.0

Gene sequence:

>342_bases
ATGAAAACGCGTAGTGAAGTTTTTCAGTTTGAGAAAGAGTTGAAATGGGAGCACCCCGCTCCGGGAATCCGTCGTCAGAT
AATGGGATACGACGGACAGTTGATGATGGTCAAGGTAGAATTTGAGAAAGGAGCGGTCGGTACGTTGCATGAACATTACC
ACAGTCAGGCTACCTACGTGGCAAGTGGAAAGTTTGAACTGACCATCGGCGACCGGAAAGAGATACTGTCGACCGGCGAT
GGCTACTATGTAGCACCCGACGAACCGCATGGATGCGTCTGTCTGGAAGCGGGAGTATTGATAGACACATTCAGTCCCAT
GCGGGCTGATTTTCTGGAATAG

Upstream 100 bases:

>100_bases
ATCGAAGTGAAAGACCTGCAAGTCTTTTCCGTAGAATCCATTTGGTAGACGGAAATCAAAAGCTATCTTTGTTTTCAGTT
ATTTAAATAGGAAAGAGAAT

Downstream 100 bases:

>100_bases
TTCCTGATGAATGGTAGGTTACCGGATAATGATGGTATAAATTTACCACATATATGGTATTTCCTGTCAACAAAAACTGC
ACTATCTTTGTAATATCTTA

Product: putative pectin degradation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKTRSEVFQFEKELKWEHPAPGIRRQIMGYDGQLMMVKVEFEKGAVGTLHEHYHSQATYVASGKFELTIGDRKEILSTGD
GYYVAPDEPHGCVCLEAGVLIDTFSPMRADFLE

Sequences:

>Translated_113_residues
MKTRSEVFQFEKELKWEHPAPGIRRQIMGYDGQLMMVKVEFEKGAVGTLHEHYHSQATYVASGKFELTIGDRKEILSTGD
GYYVAPDEPHGCVCLEAGVLIDTFSPMRADFLE
>Mature_113_residues
MKTRSEVFQFEKELKWEHPAPGIRRQIMGYDGQLMMVKVEFEKGAVGTLHEHYHSQATYVASGKFELTIGDRKEILSTGD
GYYVAPDEPHGCVCLEAGVLIDTFSPMRADFLE

Specific function: May have a role in pathogenicity [H]

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 12799; Mature: 12799

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRSEVFQFEKELKWEHPAPGIRRQIMGYDGQLMMVKVEFEKGAVGTLHEHYHSQATYV
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHCCCEEEE
ASGKFELTIGDRKEILSTGDGYYVAPDEPHGCVCLEAGVLIDTFSPMRADFLE
ECCEEEEEECCHHHHHCCCCCEEECCCCCCCEEEEECCEEEECCCCCHHCCCC
>Mature Secondary Structure
MKTRSEVFQFEKELKWEHPAPGIRRQIMGYDGQLMMVKVEFEKGAVGTLHEHYHSQATYV
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHCCCEEEE
ASGKFELTIGDRKEILSTGDGYYVAPDEPHGCVCLEAGVLIDTFSPMRADFLE
ECCEEEEEECCHHHHHCCCCCEEECCCCCCCEEEEECCEEEECCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766386 [H]