| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29348037
Identifier: 29348037
GI number: 29348037
Start: 3276144
End: 3277448
Strand: Reverse
Name: 29348037
Synonym: BT_2627
Alternate gene names: NA
Gene position: 3277448-3276144 (Counterclockwise)
Preceding gene: 29348038
Following gene: 29348036
Centisome position: 52.35
GC content: 35.56
Gene sequence:
>1305_bases ATGACAATAATAAAATATATAAAGTTTGTAGTTATAATTGTAATTGTTACAATTGTTTTTTCCTGTTCTAAGAATGAGGC GGGAAATTCAGAATATGATCCTTCTCTTCCTATTTCTTTAACAGATTTTTTCCCAATACAAGGGGGAATGGCGACTAGAA TGGTTATTGAGGGAGCTAATTTTGGAACAGATCTCTCACAAATCAAGGTATTTTTTAACCAAAAAGAGGCGTCAATTCTA AATGTGAAAAATAGTATTATTTATTTGCTTGTTCCTAAACTTCCTGGTAACGATTGTATAGTTACTGTAAAAGTTGGCAA TCAAGAGGCTAGGTTTACACGTAATTTTCAATATATAGAGAACTATTCTGTTACTACTATTGCTGGGCAACCTGGAACCA ATTTATTTGTGGAAGGGACCTTGGCTGCAGCACAATTTGGTCCCGTGCAACATCTTGCAATTGATGATGAAAATAATCTC TTTATTACGGAACGAAATGGTAGTGATGGTAAAGGAACTTGTTCTGTATTGAATGAAGAGAGTGGTACAGTAACTTTTTT GTTTAAAGCGTCAGACAATTTGAATGTACCAACTGTCAATGCTCAGACGCAGAATGTATATATACCTTTAGACGGAGGAT ATACTTTCTATGAATTGAATCCTGTAAATCAATGGATTGCTAAGAGTCGTTTGGTACTTCATCCTTCCAAAGAACAGCAA GAGGCAGGAATGGATGATTTTGAAATAAATTGGAAACATTCTTTGGCTTTTTCTAGATATGATAATATGATTTATACTCG TTCTTATGGAGGGGATTTAATAAAGGTAGACCCAGAAACAAGAGTAGGGCAAAAGATCGGCAACTTTTTTCCTAATACAG ATAGTTTTATTGTTGCTCATCCAACACAACCGGAGATTTTATATATAGCTTATGCAGCTAAACATGTTATTTATACTTAC AATATAGAGACTGGAGAACACAAATTGTTTGCTGGGGCTTTTGGACAATCAGGTTGGAACGATGGAATTGCAACTGATGC AGAATTTAATTCTCCTCGTCAAATGTCATTAGACATGGAAGGCAACATCTATATAGCTGATAGTGGTAATCACTGTATTA GAATGATAGATAAAAATGGTATAGTGACGACTCCTATTGGACAACCTGGAGAGGCAGGTTATGCAGATGGTAGCCCAGAT ATGGCTTTGTTGAACGATCCTAGAGGGGTAGCTGTGAATTCAGAAGGAGATGTGTATATTGCAGATTTAGGGAATCGCTG TATACGTAAACTTACACTTCAATAA
Upstream 100 bases:
>100_bases TAAAATGCTTATGAATATTATAGAAAGACATCCACCATGATTAATGATATCCGCTGTTTAATCATATAATAGAAACTAAT CAAATATAAAGAATATAGAA
Downstream 100 bases:
>100_bases TTATGGTATAAACAAAAGAATAAGAATATAAAGATGAAAGTGAAATATGCATTAGTGCTATTATCTTTATTGATAAGTAG TATGGAATTGTTCGCACAAG
Product: cell surface protein
Products: NA
Alternate protein names: NHL Repeat Containing Protein; Serine/Threonine Protein Kinase; IPT/TIG Domain-Containing Protein; IPT/TIG Domain Protein; YD Repeat Protein; Protein Serine/Threonine Kinase; Cell Surface Protein; SMP-30/Gluconolaconase/LRE Domain-Containing Protein; Copper Amine Oxidase Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; Ascorbate-Dependent Monooxygenase; Leucine-Rich Repeat-Containing Protein; YD Repeat-Containing Protein; Lipoprotein; Ig Domain-Containing Protein
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MTIIKYIKFVVIIVIVTIVFSCSKNEAGNSEYDPSLPISLTDFFPIQGGMATRMVIEGANFGTDLSQIKVFFNQKEASIL NVKNSIIYLLVPKLPGNDCIVTVKVGNQEARFTRNFQYIENYSVTTIAGQPGTNLFVEGTLAAAQFGPVQHLAIDDENNL FITERNGSDGKGTCSVLNEESGTVTFLFKASDNLNVPTVNAQTQNVYIPLDGGYTFYELNPVNQWIAKSRLVLHPSKEQQ EAGMDDFEINWKHSLAFSRYDNMIYTRSYGGDLIKVDPETRVGQKIGNFFPNTDSFIVAHPTQPEILYIAYAAKHVIYTY NIETGEHKLFAGAFGQSGWNDGIATDAEFNSPRQMSLDMEGNIYIADSGNHCIRMIDKNGIVTTPIGQPGEAGYADGSPD MALLNDPRGVAVNSEGDVYIADLGNRCIRKLTLQ
Sequences:
>Translated_434_residues MTIIKYIKFVVIIVIVTIVFSCSKNEAGNSEYDPSLPISLTDFFPIQGGMATRMVIEGANFGTDLSQIKVFFNQKEASIL NVKNSIIYLLVPKLPGNDCIVTVKVGNQEARFTRNFQYIENYSVTTIAGQPGTNLFVEGTLAAAQFGPVQHLAIDDENNL FITERNGSDGKGTCSVLNEESGTVTFLFKASDNLNVPTVNAQTQNVYIPLDGGYTFYELNPVNQWIAKSRLVLHPSKEQQ EAGMDDFEINWKHSLAFSRYDNMIYTRSYGGDLIKVDPETRVGQKIGNFFPNTDSFIVAHPTQPEILYIAYAAKHVIYTY NIETGEHKLFAGAFGQSGWNDGIATDAEFNSPRQMSLDMEGNIYIADSGNHCIRMIDKNGIVTTPIGQPGEAGYADGSPD MALLNDPRGVAVNSEGDVYIADLGNRCIRKLTLQ >Mature_433_residues TIIKYIKFVVIIVIVTIVFSCSKNEAGNSEYDPSLPISLTDFFPIQGGMATRMVIEGANFGTDLSQIKVFFNQKEASILN VKNSIIYLLVPKLPGNDCIVTVKVGNQEARFTRNFQYIENYSVTTIAGQPGTNLFVEGTLAAAQFGPVQHLAIDDENNLF ITERNGSDGKGTCSVLNEESGTVTFLFKASDNLNVPTVNAQTQNVYIPLDGGYTFYELNPVNQWIAKSRLVLHPSKEQQE AGMDDFEINWKHSLAFSRYDNMIYTRSYGGDLIKVDPETRVGQKIGNFFPNTDSFIVAHPTQPEILYIAYAAKHVIYTYN IETGEHKLFAGAFGQSGWNDGIATDAEFNSPRQMSLDMEGNIYIADSGNHCIRMIDKNGIVTTPIGQPGEAGYADGSPDM ALLNDPRGVAVNSEGDVYIADLGNRCIRKLTLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47861; Mature: 47729
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51125 NHL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIKYIKFVVIIVIVTIVFSCSKNEAGNSEYDPSLPISLTDFFPIQGGMATRMVIEGAN CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCC FGTDLSQIKVFFNQKEASILNVKNSIIYLLVPKLPGNDCIVTVKVGNQEARFTRNFQYIE CCCCHHHEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEECEEEEC NYSVTTIAGQPGTNLFVEGTLAAAQFGPVQHLAIDDENNLFITERNGSDGKGTCSVLNEE CCEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECC SGTVTFLFKASDNLNVPTVNAQTQNVYIPLDGGYTFYELNPVNQWIAKSRLVLHPSKEQQ CCEEEEEEECCCCCCCCEECCCCCEEEEEECCCEEEEEECCHHHHHHCCEEEECCCCHHH EAGMDDFEINWKHSLAFSRYDNMIYTRSYGGDLIKVDPETRVGQKIGNFFPNTDSFIVAH HCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCCEEEEC PTQPEILYIAYAAKHVIYTYNIETGEHKLFAGAFGQSGWNDGIATDAEFNSPRQMSLDME CCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC GNIYIADSGNHCIRMIDKNGIVTTPIGQPGEAGYADGSPDMALLNDPRGVAVNSEGDVYI CCEEEEECCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEE ADLGNRCIRKLTLQ EECCCHHHHHHCCC >Mature Secondary Structure TIIKYIKFVVIIVIVTIVFSCSKNEAGNSEYDPSLPISLTDFFPIQGGMATRMVIEGAN HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCC FGTDLSQIKVFFNQKEASILNVKNSIIYLLVPKLPGNDCIVTVKVGNQEARFTRNFQYIE CCCCHHHEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEECEEEEC NYSVTTIAGQPGTNLFVEGTLAAAQFGPVQHLAIDDENNLFITERNGSDGKGTCSVLNEE CCEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECC SGTVTFLFKASDNLNVPTVNAQTQNVYIPLDGGYTFYELNPVNQWIAKSRLVLHPSKEQQ CCEEEEEEECCCCCCCCEECCCCCEEEEEECCCEEEEEECCHHHHHHCCEEEECCCCHHH EAGMDDFEINWKHSLAFSRYDNMIYTRSYGGDLIKVDPETRVGQKIGNFFPNTDSFIVAH HCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCCEEEEC PTQPEILYIAYAAKHVIYTYNIETGEHKLFAGAFGQSGWNDGIATDAEFNSPRQMSLDME CCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC GNIYIADSGNHCIRMIDKNGIVTTPIGQPGEAGYADGSPDMALLNDPRGVAVNSEGDVYI CCEEEEECCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEE ADLGNRCIRKLTLQ EECCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA