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The map label for this gene is ykfC [H]

Identifier: 29348027

GI number: 29348027

Start: 3256696

End: 3258102

Strand: Reverse

Name: ykfC [H]

Synonym: BT_2617

Alternate gene names: 29348027

Gene position: 3258102-3256696 (Counterclockwise)

Preceding gene: 29348028

Following gene: 29348025

Centisome position: 52.04

GC content: 43.57

Gene sequence:

>1407_bases
ATGAAAGAAAGAATGCAGAAAACATCAGCCCAAGCTCATGACTTCCCTCAAAGAGCTAGGACGGAATCCGAATGGTATGA
GGGAGTGCAGACTTTCATGTGGATGACCGAAGACAACATCGTGGAAGTACCATTTGACAAAGAACACCTATTGGAAATCA
TCCTTAGTCCATCGAACCTGAACAAAGCCTATAAGGCGGTAGTCAGGAACAATGGAAGTGGCGGTATCGACAAGATGTCA
TGCGAACAATTATTGTCATGGCTAAAGGCCAATAAGGATGAACTGATAATCTCTTTGCAGTCCGGGACTTATCGCCCCAA
CCCTGTACGCAGGGTAGAAATACCAAAGGACAATGGCAAAAAGCGCCTCTTAGGAATCCCCACAGTGGTAGACCGATTGG
TGCAACAAGCCATAAACCAAGTGTTGACGCTGATATACGAGCGTCAGTTTTCCAAGACAAGTTACGGGTTCCGTCCCCAA
AGGGGTTGCCATGATGCTCTCCGTAAGGCGCAAAAGATAGTGAGTGAAGGTTATATATATGTAGTCGACCTCGACCTTGA
ACGCTTTTTCGATACGGTAAGTCATAGCAAGCTGATAGAAATACTCAGCCGTACCATAAAGGATGGAAGGGTAATAAGTC
TGATACACAAATATCTTCGTAGCGGTGTAATAAACCGAGGAATGTTCGAGATGAGTACAGAAGGAACTCCCCAAGGAGGT
CCTCTAAGTCCTCTGTTAAGTAATATCATGCTCAATGAACTGGACAAGGAACTGGAAAGACGTGGACACCCCTTTGTCCG
TTACGCAGACGATGCGATGATATTTTGCAAATCCAAACGTGCCGCCAAACGTGTAAGGGAATCGATAACTCTGTTCATAG
AAGGGAAACTCTTCCTTAAAGTGAACCATGAAAAGACGGTCGTATCTTATGTGAAAGGAGTAAAGTTCTTGGGGTACTCC
TTTTATGTGAAGAAAGGGGACTGTATTCTACTTGTACACTCAAAATCCAAAAACAAGATGAAATCAAAACTCAAAGAATT
GACAAGTCGGAGTAATGGATGGGGATATGAGAAAAGGAAACAGAAACTCAAAGATTACATAAGAGGATGGATTGCCTACT
TCTGCCTTGCACAAATGAAAAGGCTTTGTATTGAAACCGACGAATGGCTAAGACGACGTATTCGCATGTGTATCTGGAAA
TCATGGAAGAATGCCAAAACCCGAGTAGCAAACTTAAAGAAATGCGGTGTCTCTGAGTGGCAGGCATATCAATGGGGAAA
CACTCGTCTTGGTTATTGGCGTGTCTCGAACAGCCCAATAGTAACCTTTGTAATGTCCAATGATAAATTGCGTAAGGCAG
GCTATATGGAGTTCATGGACTGCTATCTCAAATGGTGCCCAAAATAG

Upstream 100 bases:

>100_bases
TTGCCGTGAGAAGTCAGCAGAGGTCATAGTAGTGGGACTGTCGATATTCCCATGAAGGACCGAACCTAATAATTAAACGA
TAGTAATTGAAAGTTACCAA

Downstream 100 bases:

>100_bases
GAACCGCCGTATGCCGAACGGTACGTATGGTGGTGTGAGATTGTGCCACGAGAAGCATGTGCTAAATGCTTCGCAACTAT
GTAGGAGATGAGGGTAGGTC

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MKERMQKTSAQAHDFPQRARTESEWYEGVQTFMWMTEDNIVEVPFDKEHLLEIILSPSNLNKAYKAVVRNNGSGGIDKMS
CEQLLSWLKANKDELIISLQSGTYRPNPVRRVEIPKDNGKKRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQ
RGCHDALRKAQKIVSEGYIYVVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRSGVINRGMFEMSTEGTPQGG
PLSPLLSNIMLNELDKELERRGHPFVRYADDAMIFCKSKRAAKRVRESITLFIEGKLFLKVNHEKTVVSYVKGVKFLGYS
FYVKKGDCILLVHSKSKNKMKSKLKELTSRSNGWGYEKRKQKLKDYIRGWIAYFCLAQMKRLCIETDEWLRRRIRMCIWK
SWKNAKTRVANLKKCGVSEWQAYQWGNTRLGYWRVSNSPIVTFVMSNDKLRKAGYMEFMDCYLKWCPK

Sequences:

>Translated_468_residues
MKERMQKTSAQAHDFPQRARTESEWYEGVQTFMWMTEDNIVEVPFDKEHLLEIILSPSNLNKAYKAVVRNNGSGGIDKMS
CEQLLSWLKANKDELIISLQSGTYRPNPVRRVEIPKDNGKKRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQ
RGCHDALRKAQKIVSEGYIYVVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRSGVINRGMFEMSTEGTPQGG
PLSPLLSNIMLNELDKELERRGHPFVRYADDAMIFCKSKRAAKRVRESITLFIEGKLFLKVNHEKTVVSYVKGVKFLGYS
FYVKKGDCILLVHSKSKNKMKSKLKELTSRSNGWGYEKRKQKLKDYIRGWIAYFCLAQMKRLCIETDEWLRRRIRMCIWK
SWKNAKTRVANLKKCGVSEWQAYQWGNTRLGYWRVSNSPIVTFVMSNDKLRKAGYMEFMDCYLKWCPK
>Mature_468_residues
MKERMQKTSAQAHDFPQRARTESEWYEGVQTFMWMTEDNIVEVPFDKEHLLEIILSPSNLNKAYKAVVRNNGSGGIDKMS
CEQLLSWLKANKDELIISLQSGTYRPNPVRRVEIPKDNGKKRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQ
RGCHDALRKAQKIVSEGYIYVVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRSGVINRGMFEMSTEGTPQGG
PLSPLLSNIMLNELDKELERRGHPFVRYADDAMIFCKSKRAAKRVRESITLFIEGKLFLKVNHEKTVVSYVKGVKFLGYS
FYVKKGDCILLVHSKSKNKMKSKLKELTSRSNGWGYEKRKQKLKDYIRGWIAYFCLAQMKRLCIETDEWLRRRIRMCIWK
SWKNAKTRVANLKKCGVSEWQAYQWGNTRLGYWRVSNSPIVTFVMSNDKLRKAGYMEFMDCYLKWCPK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=360, Percent_Identity=26.6666666666667, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6226520, Length=282, Percent_Identity=28.0141843971631, Blast_Score=113, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 54643; Mature: 54643

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERMQKTSAQAHDFPQRARTESEWYEGVQTFMWMTEDNIVEVPFDKEHLLEIILSPSNL
CCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHEECCCCEEECCCCHHHHHHHHCCCCCH
NKAYKAVVRNNGSGGIDKMSCEQLLSWLKANKDELIISLQSGTYRPNPVRRVEIPKDNGK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCCC
KRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQRGCHDALRKAQKIVSEGYIY
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
VVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRSGVINRGMFEMSTEGTPQGG
EEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC
PLSPLLSNIMLNELDKELERRGHPFVRYADDAMIFCKSKRAAKRVRESITLFIEGKLFLK
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCHHHHHHHHHHEEEEEEEEEEEE
VNHEKTVVSYVKGVKFLGYSFYVKKGDCILLVHSKSKNKMKSKLKELTSRSNGWGYEKRK
ECCCHHHHHHHHHHHHHCEEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHH
QKLKDYIRGWIAYFCLAQMKRLCIETDEWLRRRIRMCIWKSWKNAKTRVANLKKCGVSEW
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
QAYQWGNTRLGYWRVSNSPIVTFVMSNDKLRKAGYMEFMDCYLKWCPK
HHEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKERMQKTSAQAHDFPQRARTESEWYEGVQTFMWMTEDNIVEVPFDKEHLLEIILSPSNL
CCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHEECCCCEEECCCCHHHHHHHHCCCCCH
NKAYKAVVRNNGSGGIDKMSCEQLLSWLKANKDELIISLQSGTYRPNPVRRVEIPKDNGK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCCC
KRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQRGCHDALRKAQKIVSEGYIY
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
VVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRSGVINRGMFEMSTEGTPQGG
EEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC
PLSPLLSNIMLNELDKELERRGHPFVRYADDAMIFCKSKRAAKRVRESITLFIEGKLFLK
CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCHHHHHHHHHHEEEEEEEEEEEE
VNHEKTVVSYVKGVKFLGYSFYVKKGDCILLVHSKSKNKMKSKLKELTSRSNGWGYEKRK
ECCCHHHHHHHHHHHHHCEEEEEECCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHH
QKLKDYIRGWIAYFCLAQMKRLCIETDEWLRRRIRMCIWKSWKNAKTRVANLKKCGVSEW
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
QAYQWGNTRLGYWRVSNSPIVTFVMSNDKLRKAGYMEFMDCYLKWCPK
HHEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]