| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347978
Identifier: 29347978
GI number: 29347978
Start: 3205277
End: 3206509
Strand: Reverse
Name: 29347978
Synonym: BT_2568
Alternate gene names: NA
Gene position: 3206509-3205277 (Counterclockwise)
Preceding gene: 29347982
Following gene: 29347977
Centisome position: 51.22
GC content: 45.5
Gene sequence:
>1233_bases ATGAAAATACAAACTGGAAGGGGAACAATACCTCTTATCACTTTAATAGCTATTTGGTCTATCTCGGCATTGACCTCTTT GCCGGGGCTGGCTGTTTCGCCTATATTGGGCGACCTTACCAAAATCTTTCCGAAAGCGACCGACCTGGATATTCAGATGT TGACTTCGCTGCCATCGTTGCTGATTATCCCTTTTATCCTTTTGGGTGGTAAGCTCACGGAAAAGGTTGATTTTGTCCGT ATCCTGAAAATCGGACTCTGGCTCTTTGCAGCAAGCGGTATCTTGTATCTGATCTCCAACAAAATGTGGCAATTAATCGT CGTGAGTGCCCTGCTGGGCATCGGCTCCGGACTGATTATTCCGCTGTCCACGGGATTAATCTCAAAATACTTTGTGGGTA CTTACCGGGTGAAACAATTCGGATTGAGTTCTGCCATTACCAATTTTACATTGGTGATAGCTACTGCCGTGACCGGATAT CTGGCGGAAGTCAGCTGGCATTTGCCGTTTTTGGTCTATCTGCTCCCTTTGATTTCTATTCTGCTGGTCGGTCACTTAAA AGAGAGCCGGTCTGACGCCGCCGTCGAACCTTCTTCTCAAAGTACCGCGCCATCCGGACAAACGGCTGCCGCAGATACCG GAGGAAGTAAATATGGAATCCATATCAGGCATCTGCTTCAGATCATGCTTTTCTACGGAGTGACGACTTTTATTGTGCTG GCAGTCATATTCAACCTTTCTTTCCTGATGGAGAAACACCATTTCTCCAGTGGCAATTCGGGACTGATGATCTCGCTTTT CTTTTTAGCGATTATGGCTCCGGGTTTCTGTCTGGACAAGATAGTGGATGAACTGAAAGAGCGTACCAAAGCATACAGCC TCCTGTCTATGGCTGTGGGGCTGGCGCTGATCTGGATTGCCCCGATCGAATGGCTGATTATTCCGGGATGTATCCTGGTC GGTTTGGGATATGGCATTATTCAGCCTATGCTGTATGATAAAACGACACATACGGCACTGCCTCAAAAGGCGACAATGGC ATTGGCTTTTGTAATGATGATGAATTATCTCGCCATCTTGCTTTATCCTTTTATTATAGATTTTCTCCAAAATCTGTTTC ATACCCAGTCGCAAGAGTTTCCTTTTGTCTTCAACTTGTTGATAACTATTGTCACATTCTTTTGGGCTTACCTGCGCCGC GATACCTTTTTGTTTAACGATCAACTGAAATAA
Upstream 100 bases:
>100_bases GTGTTTTTCACCCGTTTTTTGAATATTCACTGTTGCCTCATTTGAACTTTATAAGGTAATCATTGTTTTCATCAGACCTA AACTTTTAACGAACCGGTAT
Downstream 100 bases:
>100_bases AAAAAGATGAAGAATAAGAAACTGGAAGCCAATCTGAGTATGGCTGTATCAAAAATATTCAGCGGTTTGAATATGAATGC CCTGAAGTATCTGCTTCCCC
Product: putative sugar transporter
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR DTFLFNDQLK
Sequences:
>Translated_410_residues MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR DTFLFNDQLK >Mature_410_residues MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSLLIIPFILLGGKLTEKVDFVR ILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLIIPLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGY LAEVSWHLPFLVYLLPLISILLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVGLALIWIAPIEWLIIPGCILV GLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAILLYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRR DTFLFNDQLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45251; Mature: 45251
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSL CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCHHH LIIPFILLGGKLTEKVDFVRILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLII HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE PLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGYLAEVSWHLPFLVYLLPLISI EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVG HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH LALIWIAPIEWLIIPGCILVGLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH LYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRRDTFLFNDQLK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC >Mature Secondary Structure MKIQTGRGTIPLITLIAIWSISALTSLPGLAVSPILGDLTKIFPKATDLDIQMLTSLPSL CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCHHH LIIPFILLGGKLTEKVDFVRILKIGLWLFAASGILYLISNKMWQLIVVSALLGIGSGLII HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE PLSTGLISKYFVGTYRVKQFGLSSAITNFTLVIATAVTGYLAEVSWHLPFLVYLLPLISI EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGHLKESRSDAAVEPSSQSTAPSGQTAAADTGGSKYGIHIRHLLQIMLFYGVTTFIVL HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AVIFNLSFLMEKHHFSSGNSGLMISLFFLAIMAPGFCLDKIVDELKERTKAYSLLSMAVG HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH LALIWIAPIEWLIIPGCILVGLGYGIIQPMLYDKTTHTALPQKATMALAFVMMMNYLAIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH LYPFIIDFLQNLFHTQSQEFPFVFNLLITIVTFFWAYLRRDTFLFNDQLK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA