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The map label for this gene is ycdK [C]

Identifier: 29347885

GI number: 29347885

Start: 3096315

End: 3097469

Strand: Reverse

Name: ycdK [C]

Synonym: BT_2475

Alternate gene names: 29347885

Gene position: 3097469-3096315 (Counterclockwise)

Preceding gene: 29347886

Following gene: 29347884

Centisome position: 49.48

GC content: 44.59

Gene sequence:

>1155_bases
ATGAACAACAAAAAACAACCAACCAATCAATCAGAGAATACATTAACCGAGATTTTTAAATATGAAGTAAAAGAAGGCGT
TTCAGAGTTTCATGTAATGATTCACTCTACCCGGCCGGAAGACACTTATGAAGAACAATTAAATGCAGTAGCCAATGCCT
ACAATGATTTGCTTGCAGGTGAATTGAAAGGTGCCATGGCTGTGTTTAAACGTTATTTTCTGAGTGATACCGCCAATCAG
GCTGACCTCCTGCTGGCTATCACTACCGAAAGTTCCGACTGTGCTCTTTCCGTGGTAGAGCAACCCCCTTTGGATGGGAC
GAAAATAGCTTTGTGGGCTTATTTACAGACCAATGTGCAGACACAAGTGCTGCACAACGGATTGTTTGAAGTAAAGCACA
ATGCGTACCGCCACCTGTGGGGAGGCAGTGTTTTCAATCGTGCCGCAAATTCTGAGTACCAGACCCGTTTGTTGCTGAAT
GACTACGCGATGCAACTTATGGAACAAGGATGTAAATTGGCGGATAACTGTATCCGTACCTGGTTCTTCGTACAGAATGT
GGATGTGAATTATGCCGGTGTGGTAAAGGCGCGTAATGAGGTTTTCGTCACTCAGAACCTGACGGAAAAAACACACTATA
TTGCCAGTACAGGTATCGGCGGACGTCATGCTGATCCTAAAGTATTGGTGCAAATGGATACCTATGCTGTGGCAGGCTTA
AAGCCGGAACAGATACACTTCCTTTATGCTCCTACGCATCTGAATCCTACTTATGAGTATGGTGTCAGCTTTGAACGCGG
AACGTATGTCGATTACGGTGACCGGCGTCAAGTGTTTATTTCAGGTACGGCAAGTATCAACAATAAAGGGGAAGTAGTAT
ACCCCGGCGACATCCGTAGGCAGACGGAACGGATGTGGGAAAATGTAGAAGCCTTGCTGAAAGAGGCGGAGTGCACGTTT
GATGATTTGGGGCATATGATTGTTTACTTGCGTGACATTGCAGACTATGCAGTTGTGAAGAGTATGTATGACAAGTGTTT
CCCAGATACTCCTAAAGTATTTGTACATGCGCCTGTATGCCGTCCCGGATGGTTGATCGAAATGGAATGTATGGGAGTTA
AGGCTTTGAAGAATAAGGAATATGCACCTTTTTAA

Upstream 100 bases:

>100_bases
TACCGATATGCTGTCAGAAGATGAGCAACCCTTATTGAAACTGATAGATAATTGGATAAACGAAGGTATTTTTTTGAATA
ACGAGTAAACGATATTGGAA

Downstream 100 bases:

>100_bases
TCTGAAGAAAAGTCTCGTCTCCTTATATATCTGTCTGGTGGCTTTACTTGCTGTGGTGACCTTTGTGGAGCATGTACGCG
GAACAGAGTTTGTAGAAAAG

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-Psp; Endoribonuclease L-PSP Family; Endoribonuclease L-PSP Family Protein; Endoribonuclease

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNNKKQPTNQSENTLTEIFKYEVKEGVSEFHVMIHSTRPEDTYEEQLNAVANAYNDLLAGELKGAMAVFKRYFLSDTANQ
ADLLLAITTESSDCALSVVEQPPLDGTKIALWAYLQTNVQTQVLHNGLFEVKHNAYRHLWGGSVFNRAANSEYQTRLLLN
DYAMQLMEQGCKLADNCIRTWFFVQNVDVNYAGVVKARNEVFVTQNLTEKTHYIASTGIGGRHADPKVLVQMDTYAVAGL
KPEQIHFLYAPTHLNPTYEYGVSFERGTYVDYGDRRQVFISGTASINNKGEVVYPGDIRRQTERMWENVEALLKEAECTF
DDLGHMIVYLRDIADYAVVKSMYDKCFPDTPKVFVHAPVCRPGWLIEMECMGVKALKNKEYAPF

Sequences:

>Translated_384_residues
MNNKKQPTNQSENTLTEIFKYEVKEGVSEFHVMIHSTRPEDTYEEQLNAVANAYNDLLAGELKGAMAVFKRYFLSDTANQ
ADLLLAITTESSDCALSVVEQPPLDGTKIALWAYLQTNVQTQVLHNGLFEVKHNAYRHLWGGSVFNRAANSEYQTRLLLN
DYAMQLMEQGCKLADNCIRTWFFVQNVDVNYAGVVKARNEVFVTQNLTEKTHYIASTGIGGRHADPKVLVQMDTYAVAGL
KPEQIHFLYAPTHLNPTYEYGVSFERGTYVDYGDRRQVFISGTASINNKGEVVYPGDIRRQTERMWENVEALLKEAECTF
DDLGHMIVYLRDIADYAVVKSMYDKCFPDTPKVFVHAPVCRPGWLIEMECMGVKALKNKEYAPF
>Mature_384_residues
MNNKKQPTNQSENTLTEIFKYEVKEGVSEFHVMIHSTRPEDTYEEQLNAVANAYNDLLAGELKGAMAVFKRYFLSDTANQ
ADLLLAITTESSDCALSVVEQPPLDGTKIALWAYLQTNVQTQVLHNGLFEVKHNAYRHLWGGSVFNRAANSEYQTRLLLN
DYAMQLMEQGCKLADNCIRTWFFVQNVDVNYAGVVKARNEVFVTQNLTEKTHYIASTGIGGRHADPKVLVQMDTYAVAGL
KPEQIHFLYAPTHLNPTYEYGVSFERGTYVDYGDRRQVFISGTASINNKGEVVYPGDIRRQTERMWENVEALLKEAECTF
DDLGHMIVYLRDIADYAVVKSMYDKCFPDTPKVFVHAPVCRPGWLIEMECMGVKALKNKEYAPF

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43641; Mature: 43641

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKKQPTNQSENTLTEIFKYEVKEGVSEFHVMIHSTRPEDTYEEQLNAVANAYNDLLAG
CCCCCCCCCCCHHHHHHHHHHHHHHCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
ELKGAMAVFKRYFLSDTANQADLLLAITTESSDCALSVVEQPPLDGTKIALWAYLQTNVQ
HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEHHCCH
TQVLHNGLFEVKHNAYRHLWGGSVFNRAANSEYQTRLLLNDYAMQLMEQGCKLADNCIRT
HHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFVQNVDVNYAGVVKARNEVFVTQNLTEKTHYIASTGIGGRHADPKVLVQMDTYAVAGL
EEEEEECCCCEEEEEEECCEEEEECCCCHHHHEEEECCCCCCCCCCEEEEEEECEEECCC
KPEQIHFLYAPTHLNPTYEYGVSFERGTYVDYGDRRQVFISGTASINNKGEVVYPGDIRR
CCCCEEEEEECCCCCCCHHHCCEECCCCEECCCCCEEEEEEEEECCCCCCCEEECCHHHH
QTERMWENVEALLKEAECTFDDLGHMIVYLRDIADYAVVKSMYDKCFPDTPKVFVHAPVC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
RPGWLIEMECMGVKALKNKEYAPF
CCCCEEEEEECCHHHHCCCCCCCC
>Mature Secondary Structure
MNNKKQPTNQSENTLTEIFKYEVKEGVSEFHVMIHSTRPEDTYEEQLNAVANAYNDLLAG
CCCCCCCCCCCHHHHHHHHHHHHHHCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
ELKGAMAVFKRYFLSDTANQADLLLAITTESSDCALSVVEQPPLDGTKIALWAYLQTNVQ
HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEHHCCH
TQVLHNGLFEVKHNAYRHLWGGSVFNRAANSEYQTRLLLNDYAMQLMEQGCKLADNCIRT
HHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFFVQNVDVNYAGVVKARNEVFVTQNLTEKTHYIASTGIGGRHADPKVLVQMDTYAVAGL
EEEEEECCCCEEEEEEECCEEEEECCCCHHHHEEEECCCCCCCCCCEEEEEEECEEECCC
KPEQIHFLYAPTHLNPTYEYGVSFERGTYVDYGDRRQVFISGTASINNKGEVVYPGDIRR
CCCCEEEEEECCCCCCCHHHCCEECCCCEECCCCCEEEEEEEEECCCCCCCEEECCHHHH
QTERMWENVEALLKEAECTFDDLGHMIVYLRDIADYAVVKSMYDKCFPDTPKVFVHAPVC
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
RPGWLIEMECMGVKALKNKEYAPF
CCCCEEEEEECCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA