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The map label for this gene is pal [C]

Identifier: 29347852

GI number: 29347852

Start: 3058607

End: 3059701

Strand: Reverse

Name: pal [C]

Synonym: BT_2442

Alternate gene names: 29347852

Gene position: 3059701-3058607 (Counterclockwise)

Preceding gene: 29347853

Following gene: 29347851

Centisome position: 48.87

GC content: 42.1

Gene sequence:

>1095_bases
ATGAACATAAAGAAATTGTGGATGCCTGTATTCGCCTTACTATTAAGTAGTACAGTCATTTCCGCACAAGAACAAAGAAT
AAAAGAAGAAGGTAAAACTGAATTCAAACCTCATTGGTTTATGCAAGTGCAAGTAGGTGCTGCTCACACACTTGGCGAAG
CTAAGTTTAGTGATCTTATATCTCCTGCAGCAGCGATAAACGTAGGTTATCAGTTTGCTCCTGCATGGCGGGCACGTGTT
GGTGTCAGCGGATGGCAGGCAAAAGGAGGCTGGGTTTCTCCGCAACAGGATTACCAGTACAAATATTTGCAAGGTAACAT
TGACATCGTTTCTGATCTTAGCACATTGTTTTGTGGTTTTAATCCCAAACGTGTATTCAATGGTTATGTCTTTCTCGGAG
GAGGATTAAATCGTGGCTTTGATAACGATGAGGCGAATGCACTGGATACACGAACCTATGAGATGGAATATCTTTGGCGG
GACGGAAAGTTTCTCATTGCTGGGCGCATGGGTTTAGGATGTAATCTGCGTCTGAATGATCGCTTGTCCATCAACATCGA
AGGTAATGCAAATGTCTTGTCCGACAAGTTCAACTCAAAGAAGGCAGGAAATGCTGACTGGCAGTTCAATGCTCTCATTG
GTTTGAATATTAAATTCGGTAAAGGCTATACGGAAACTAAACCTGTATATTATGAGGCAGAACCTGTAGTAGTGGAACAA
CCGAAGCCTGTTCCCGTGGTAGAACAGCCACAGCCGAAGAAAGAAGTTGTAGTACAGCCAATGAAACAGGATATCTTCTT
TGCTTTGAACTCAGCGAAGATACAAGACGATCAAAAGTCAAAAATAGATATGTTGGTAGAATATCTGCAAAACAATCCGG
CTGCAAAGGTTAAAGTGACAGGCTATGCCGATGTAAATACAGGCAATCCTAAAATCAACAAGTCGTTGTCTGAAAAACGC
GCAGGCAATGTTGCGGATGCTTTGAAGGCAAAAGGAATAACCACTGACAGAATTATGGTTGATTCCAAAGGAGACACTGT
TCAGCCATATAAAGCACCAGAAGAAAATCGTGTGAGTATCTGTATCGCCGAATAA

Upstream 100 bases:

>100_bases
TAGCAATATCGACAAAGATAAGAAGGGTATCTTTTTCAAAAGAAGGATACCCTTCTTTAATAAAGTTAATGCAGTATCAT
ATTAAAAAGAAAAGATAAGC

Downstream 100 bases:

>100_bases
ACAAAGTTATTAACAAGATATTATAAGAAGATATTCTAAAAAATATGTTGCTTCATCGGTACAAAAGAATTTCTAATGGT
GTAGAAATATCATTGATACA

Product: major outer membrane protein OmpA

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNIKKLWMPVFALLLSSTVISAQEQRIKEEGKTEFKPHWFMQVQVGAAHTLGEAKFSDLISPAAAINVGYQFAPAWRARV
GVSGWQAKGGWVSPQQDYQYKYLQGNIDIVSDLSTLFCGFNPKRVFNGYVFLGGGLNRGFDNDEANALDTRTYEMEYLWR
DGKFLIAGRMGLGCNLRLNDRLSINIEGNANVLSDKFNSKKAGNADWQFNALIGLNIKFGKGYTETKPVYYEAEPVVVEQ
PKPVPVVEQPQPKKEVVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVTGYADVNTGNPKINKSLSEKR
AGNVADALKAKGITTDRIMVDSKGDTVQPYKAPEENRVSICIAE

Sequences:

>Translated_364_residues
MNIKKLWMPVFALLLSSTVISAQEQRIKEEGKTEFKPHWFMQVQVGAAHTLGEAKFSDLISPAAAINVGYQFAPAWRARV
GVSGWQAKGGWVSPQQDYQYKYLQGNIDIVSDLSTLFCGFNPKRVFNGYVFLGGGLNRGFDNDEANALDTRTYEMEYLWR
DGKFLIAGRMGLGCNLRLNDRLSINIEGNANVLSDKFNSKKAGNADWQFNALIGLNIKFGKGYTETKPVYYEAEPVVVEQ
PKPVPVVEQPQPKKEVVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVTGYADVNTGNPKINKSLSEKR
AGNVADALKAKGITTDRIMVDSKGDTVQPYKAPEENRVSICIAE
>Mature_364_residues
MNIKKLWMPVFALLLSSTVISAQEQRIKEEGKTEFKPHWFMQVQVGAAHTLGEAKFSDLISPAAAINVGYQFAPAWRARV
GVSGWQAKGGWVSPQQDYQYKYLQGNIDIVSDLSTLFCGFNPKRVFNGYVFLGGGLNRGFDNDEANALDTRTYEMEYLWR
DGKFLIAGRMGLGCNLRLNDRLSINIEGNANVLSDKFNSKKAGNADWQFNALIGLNIKFGKGYTETKPVYYEAEPVVVEQ
PKPVPVVEQPQPKKEVVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVTGYADVNTGNPKINKSLSEKR
AGNVADALKAKGITTDRIMVDSKGDTVQPYKAPEENRVSICIAE

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 40530; Mature: 40530

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKKLWMPVFALLLSSTVISAQEQRIKEEGKTEFKPHWFMQVQVGAAHTLGEAKFSDLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHCCHHHHHHHH
SPAAAINVGYQFAPAWRARVGVSGWQAKGGWVSPQQDYQYKYLQGNIDIVSDLSTLFCGF
CCHHEEECCEEECCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEHHHHHHHHCCC
NPKRVFNGYVFLGGGLNRGFDNDEANALDTRTYEMEYLWRDGKFLIAGRMGLGCNLRLND
CHHHEECCEEEECCCCCCCCCCCCCCCEECEEEEEEEEEECCCEEEEECCCCCEEEEECC
RLSINIEGNANVLSDKFNSKKAGNADWQFNALIGLNIKFGKGYTETKPVYYEAEPVVVEQ
EEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCEEEEEC
PKPVPVVEQPQPKKEVVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVT
CCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
GYADVNTGNPKINKSLSEKRAGNVADALKAKGITTDRIMVDSKGDTVQPYKAPEENRVSI
EEEECCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCEEEEECCCCEECCCCCCCCCCEEE
CIAE
EEEC
>Mature Secondary Structure
MNIKKLWMPVFALLLSSTVISAQEQRIKEEGKTEFKPHWFMQVQVGAAHTLGEAKFSDLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHCCHHHHHHHH
SPAAAINVGYQFAPAWRARVGVSGWQAKGGWVSPQQDYQYKYLQGNIDIVSDLSTLFCGF
CCHHEEECCEEECCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEHHHHHHHHCCC
NPKRVFNGYVFLGGGLNRGFDNDEANALDTRTYEMEYLWRDGKFLIAGRMGLGCNLRLND
CHHHEECCEEEECCCCCCCCCCCCCCCEECEEEEEEEEEECCCEEEEECCCCCEEEEECC
RLSINIEGNANVLSDKFNSKKAGNADWQFNALIGLNIKFGKGYTETKPVYYEAEPVVVEQ
EEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCEEEEEC
PKPVPVVEQPQPKKEVVVQPMKQDIFFALNSAKIQDDQKSKIDMLVEYLQNNPAAKVKVT
CCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
GYADVNTGNPKINKSLSEKRAGNVADALKAKGITTDRIMVDSKGDTVQPYKAPEENRVSI
EEEECCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCEEEEECCCCEECCCCCCCCCCEEE
CIAE
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]