Definition Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome.
Accession NC_004663
Length 6,260,361

Click here to switch to the map view.

The map label for this gene is 29347827

Identifier: 29347827

GI number: 29347827

Start: 3018122

End: 3019972

Strand: Reverse

Name: 29347827

Synonym: BT_2417

Alternate gene names: NA

Gene position: 3019972-3018122 (Counterclockwise)

Preceding gene: 29347828

Following gene: 29347826

Centisome position: 48.24

GC content: 41.87

Gene sequence:

>1851_bases
ATGCTCTTTATAGGTACATTCTTCATCTGTCTCTTCATCTTCATGATGCAGTTTTTGTGGAGATATGTAGACGAGTTAGT
CGGAAAGGGATTGGATATGAGTGTGATAGCTCAGTTCTTCTTTTATTCCGCATTGACACTGGTTCCAATATCGTTGCCGT
TGGCAATATTGCTGGCTTCTTTAATAACCTTCGGCAACTTTGGCGAACGTTACGAGTTGCTCGCAATGAAAGCTGCGGGT
ATATCCTTGCTTAAAATTATGCGCCCGCTGGCTTTCTTTGTCTGTGGTTTGGTTGCTGTCTCTTTTTATTTCCAGAATGT
CGTGGGGCCTATTGCTCAGACGAAACTATACACACTGATTATTTCGATGAAACAAAAGTCTCCGGAATTGGATATCCCGG
AGGGGGTGTTTTATTCGGAAATACCGGATTATAACCTGAAGATAGCCAAGAAGAACCGGAAGACAGGTATGATGTATGAT
GTGCTGATTTATAATCTGAAAGATGGATTTGAGAACGCACATATTATTTATGCAGATTCCGGACGGATGGAAATGACTGC
AGACAAGCAGCATCTCTGGCTGCATTTGTACAGTGGTGATTTATTTGAAAACCTGAGATCACAGAGTATGAAATCTCAGA
ATGTACCGTATCGTCGGGAAGAATTCCGGGAAAAACATACGATTATTGAGTTTGACTCAGACTTTAATATGGCGGATGCC
AGTATTATGAGTAATACATCTGCTGCCAAAGATATGTCGATGCTGCAAGCCTCCATCGACTCAATGAAAATGGTGGGTGA
TAGTATCGGAAGACAATATTACCGGGAAGTTTCTGAAGGGAATTTCCGTAGCACCTATGGATTGACAAAGGAGGATACGG
TCAAGATTATGGAGGCGAATATTACTGAATATAATATCGACAGTCTCTATGAGGTAGCTCCTTTGATGCAGAAGCAGAAG
GTGATTTCATCCGCTGCAAGTCGTGCGGAAAACCTGAGCAGTGATATAAACTTCAAGAGTTACACGATGGGTAGCCATGA
TTATAGTATGCGGAAGCATGAGATAGAGTGGCATAAAAAGATCACTATTTCACTTTCCTGCCTGCTGTTCTTCTTCATTG
GTGCCCCATTGGGCGGAATTATCCGTAAAGGAGGACTCGGTATGCCGGTCATCGTTTCGGTGATGGTATTCATCATTTAT
TATATCATAGATAATACAGGCTATAAGATGGCACGTGACGGCAGATGGGTCGTATGGATGGGAGTGTGGACCAGTAGTGC
CGTGCTTGCCCCGTTAGGTGCTTTCCTGACTTACAAATCAAATAAAGACTCTGTAGTGCTCAATGCCGATGCGTATATCA
ATTGGTTTAAGAAGATTGTCGGTATCCGTAACATACGCCATTTATTCAAGAAAGAGGTGGTGATTCACGATCCGGATTAT
ACTCGCATACCGGGTGATTTGCAGGTGCTTACTGACGAGTGCAAAGAGTATATAGCTAAAAATCGCCTGATGAAAGCCCC
GAATTATTTTAAGTTGTGGATGTCGGGCGAGAAGGATGATGAGATGATATCTATCAATGAAAAGTTGGAGACACTCATAG
AGGAGATGTCCAATACGAAGTCTGTGACTTTGCTGAACACATTAAACAATTATCCGATTATTTCCGTTTCTGCTCATATA
CGCCCGTTCCACACCTATTGGCTGAATCTGGCTGCCGGGGTTATTTTCCCTATAGGATTATTCTTTTATTTCCGTATCTG
GGCATTCCGTGTCCGGTTGGCGAAAGATATGGAACGGATAATAAAAAACAATGAACAAATTCAATTCATCATACAGAATA
TTAATAAATAA

Upstream 100 bases:

>100_bases
ATGCTACTTTTTTTGTGCTAATTTTGCGTCTTAATTGCACGAACCTATTAAGATGCTACGCATAAAGAAATTAGATATAT
TTATCGTAAAGAGCTTCCTG

Downstream 100 bases:

>100_bases
GTGTTATGGAAGAGATTAAAATGGATAGAATAGAAGATGCGATTGCCGATTTCAAAGAAGGCAAGTTTGTCATTGTAGTG
GATGATGAAGATCGTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Permease; Permease Yjgp/Yjgq Family Protein; Permease YjgP/YjgQ Family; YjgP/YjgQ Family Permease

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG
ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD
VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA
SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK
VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY
YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY
TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI
RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK

Sequences:

>Translated_616_residues
MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG
ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD
VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA
SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK
VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY
YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY
TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI
RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK
>Mature_616_residues
MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG
ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD
VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA
SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK
VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY
YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY
TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI
RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK

Specific function: Unknown

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70904; Mature: 70904

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYADS
HHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCEEEEECC
GRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA
CCEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCHH
SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEAN
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEECC
ITEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKK
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHE
ITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM
EEHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEE
GVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY
EECCCCHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCC
SVTLLNTLNNYPIISVSAHIRPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERI
EEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKNNEQIQFIIQNINK
HCCCCCEEHHHHHCCC
>Mature Secondary Structure
MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYADS
HHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCEEEEECC
GRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA
CCEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCHH
SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEAN
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEECC
ITEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKK
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHE
ITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM
EEHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEE
GVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY
EECCCCHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCC
SVTLLNTLNNYPIISVSAHIRPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERI
EEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKNNEQIQFIIQNINK
HCCCCCEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA