| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29347827
Identifier: 29347827
GI number: 29347827
Start: 3018122
End: 3019972
Strand: Reverse
Name: 29347827
Synonym: BT_2417
Alternate gene names: NA
Gene position: 3019972-3018122 (Counterclockwise)
Preceding gene: 29347828
Following gene: 29347826
Centisome position: 48.24
GC content: 41.87
Gene sequence:
>1851_bases ATGCTCTTTATAGGTACATTCTTCATCTGTCTCTTCATCTTCATGATGCAGTTTTTGTGGAGATATGTAGACGAGTTAGT CGGAAAGGGATTGGATATGAGTGTGATAGCTCAGTTCTTCTTTTATTCCGCATTGACACTGGTTCCAATATCGTTGCCGT TGGCAATATTGCTGGCTTCTTTAATAACCTTCGGCAACTTTGGCGAACGTTACGAGTTGCTCGCAATGAAAGCTGCGGGT ATATCCTTGCTTAAAATTATGCGCCCGCTGGCTTTCTTTGTCTGTGGTTTGGTTGCTGTCTCTTTTTATTTCCAGAATGT CGTGGGGCCTATTGCTCAGACGAAACTATACACACTGATTATTTCGATGAAACAAAAGTCTCCGGAATTGGATATCCCGG AGGGGGTGTTTTATTCGGAAATACCGGATTATAACCTGAAGATAGCCAAGAAGAACCGGAAGACAGGTATGATGTATGAT GTGCTGATTTATAATCTGAAAGATGGATTTGAGAACGCACATATTATTTATGCAGATTCCGGACGGATGGAAATGACTGC AGACAAGCAGCATCTCTGGCTGCATTTGTACAGTGGTGATTTATTTGAAAACCTGAGATCACAGAGTATGAAATCTCAGA ATGTACCGTATCGTCGGGAAGAATTCCGGGAAAAACATACGATTATTGAGTTTGACTCAGACTTTAATATGGCGGATGCC AGTATTATGAGTAATACATCTGCTGCCAAAGATATGTCGATGCTGCAAGCCTCCATCGACTCAATGAAAATGGTGGGTGA TAGTATCGGAAGACAATATTACCGGGAAGTTTCTGAAGGGAATTTCCGTAGCACCTATGGATTGACAAAGGAGGATACGG TCAAGATTATGGAGGCGAATATTACTGAATATAATATCGACAGTCTCTATGAGGTAGCTCCTTTGATGCAGAAGCAGAAG GTGATTTCATCCGCTGCAAGTCGTGCGGAAAACCTGAGCAGTGATATAAACTTCAAGAGTTACACGATGGGTAGCCATGA TTATAGTATGCGGAAGCATGAGATAGAGTGGCATAAAAAGATCACTATTTCACTTTCCTGCCTGCTGTTCTTCTTCATTG GTGCCCCATTGGGCGGAATTATCCGTAAAGGAGGACTCGGTATGCCGGTCATCGTTTCGGTGATGGTATTCATCATTTAT TATATCATAGATAATACAGGCTATAAGATGGCACGTGACGGCAGATGGGTCGTATGGATGGGAGTGTGGACCAGTAGTGC CGTGCTTGCCCCGTTAGGTGCTTTCCTGACTTACAAATCAAATAAAGACTCTGTAGTGCTCAATGCCGATGCGTATATCA ATTGGTTTAAGAAGATTGTCGGTATCCGTAACATACGCCATTTATTCAAGAAAGAGGTGGTGATTCACGATCCGGATTAT ACTCGCATACCGGGTGATTTGCAGGTGCTTACTGACGAGTGCAAAGAGTATATAGCTAAAAATCGCCTGATGAAAGCCCC GAATTATTTTAAGTTGTGGATGTCGGGCGAGAAGGATGATGAGATGATATCTATCAATGAAAAGTTGGAGACACTCATAG AGGAGATGTCCAATACGAAGTCTGTGACTTTGCTGAACACATTAAACAATTATCCGATTATTTCCGTTTCTGCTCATATA CGCCCGTTCCACACCTATTGGCTGAATCTGGCTGCCGGGGTTATTTTCCCTATAGGATTATTCTTTTATTTCCGTATCTG GGCATTCCGTGTCCGGTTGGCGAAAGATATGGAACGGATAATAAAAAACAATGAACAAATTCAATTCATCATACAGAATA TTAATAAATAA
Upstream 100 bases:
>100_bases ATGCTACTTTTTTTGTGCTAATTTTGCGTCTTAATTGCACGAACCTATTAAGATGCTACGCATAAAGAAATTAGATATAT TTATCGTAAAGAGCTTCCTG
Downstream 100 bases:
>100_bases GTGTTATGGAAGAGATTAAAATGGATAGAATAGAAGATGCGATTGCCGATTTCAAAGAAGGCAAGTTTGTCATTGTAGTG GATGATGAAGATCGTGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; Permease Yjgp/Yjgq Family Protein; Permease YjgP/YjgQ Family; YjgP/YjgQ Family Permease
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK
Sequences:
>Translated_616_residues MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK >Mature_616_residues MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLASLITFGNFGERYELLAMKAAG ISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYD VLIYNLKDGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEANITEYNIDSLYEVAPLMQKQK VISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIY YIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTKSVTLLNTLNNYPIISVSAHI RPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERIIKNNEQIQFIIQNINK
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70904; Mature: 70904
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYADS HHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCEEEEECC GRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA CCEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCHH SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEAN HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEECC ITEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKK CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHE ITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM EEHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEE GVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY EECCCCHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTK CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCC SVTLLNTLNNYPIISVSAHIRPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERI EEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IKNNEQIQFIIQNINK HCCCCCEEHHHHHCCC >Mature Secondary Structure MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYADS HHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCCEEEEECC GRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDSDFNMADA CCEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCCCHH SIMSNTSAAKDMSMLQASIDSMKMVGDSIGRQYYREVSEGNFRSTYGLTKEDTVKIMEAN HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEECC ITEYNIDSLYEVAPLMQKQKVISSAASRAENLSSDINFKSYTMGSHDYSMRKHEIEWHKK CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHE ITISLSCLLFFFIGAPLGGIIRKGGLGMPVIVSVMVFIIYYIIDNTGYKMARDGRWVVWM EEHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEE GVWTSSAVLAPLGAFLTYKSNKDSVVLNADAYINWFKKIVGIRNIRHLFKKEVVIHDPDY EECCCCHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TRIPGDLQVLTDECKEYIAKNRLMKAPNYFKLWMSGEKDDEMISINEKLETLIEEMSNTK CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCC SVTLLNTLNNYPIISVSAHIRPFHTYWLNLAAGVIFPIGLFFYFRIWAFRVRLAKDMERI EEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IKNNEQIQFIIQNINK HCCCCCEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA