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The map label for this gene is araC [C]

Identifier: 29347316

GI number: 29347316

Start: 2395044

End: 2395601

Strand: Reverse

Name: araC [C]

Synonym: BT_1906

Alternate gene names: 29347316

Gene position: 2395601-2395044 (Counterclockwise)

Preceding gene: 29347318

Following gene: 29347315

Centisome position: 38.27

GC content: 41.4

Gene sequence:

>558_bases
ATGATTACGGTTGTTTTTCAACCTTATGCAGCGAAAGCCTTGCTCCACATTCCCGTTCACTTGTTTCATGGGAAAGATGT
AGCGATGGATGAAGTGGAAGATGTCGAACTATCGGATTTGGCGAAGCAAGTCACTGATACTTCTGATAATATAGTCTGTA
TTCGTCTGATAGAGCAGTTTTTTCTTCGTCGTTTATATGCTTTTTCCGAGTATAATCTGAAGAGGATGTCTGCTGTCTTT
CAGGAAATCAATCTTCAACCACAGATAAATATTCCTCAATTGTCGGAGGCGGCTTGTTTGAGTAGCAAGCAGTTCGGACG
TGTTTTTGCCGATCATGTCGGTACGACTCCCAAGGAATATCTTCGTATTGTGCGTATGCAACGTGCTTTATTTCTGTTGC
AACAGGATGTGACTTTGCCTTTTGTACAAGTGGCCTATGAATGTGGATACTCCGATCAGTCCCACATGATCAAGGAATTC
AAACTATTTTCCGGTTATACGCCTGCAGAATATCTTTCTGTTTGTGCTCCTTATTCTGATTACTTCTCGGAATTTTGA

Upstream 100 bases:

>100_bases
ACAACTCTTCCTGCAGAATGATTTAAAGTTGCAGCCACAGTCTTTTATTTGCGGACAGTCGATCGGATTCTCCGATGTGT
TGTCGACGGGTAGGATAGAG

Downstream 100 bases:

>100_bases
AAATGTCTTTTTTTTCCTATCAGAGCTTTGTGGCATCCCTTACTTTTGCAGTGTCTTTGCAAAGGCTCAATAGTAACCAT
AAAAAAAGAACGAAATGAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MITVVFQPYAAKALLHIPVHLFHGKDVAMDEVEDVELSDLAKQVTDTSDNIVCIRLIEQFFLRRLYAFSEYNLKRMSAVF
QEINLQPQINIPQLSEAACLSSKQFGRVFADHVGTTPKEYLRIVRMQRALFLLQQDVTLPFVQVAYECGYSDQSHMIKEF
KLFSGYTPAEYLSVCAPYSDYFSEF

Sequences:

>Translated_185_residues
MITVVFQPYAAKALLHIPVHLFHGKDVAMDEVEDVELSDLAKQVTDTSDNIVCIRLIEQFFLRRLYAFSEYNLKRMSAVF
QEINLQPQINIPQLSEAACLSSKQFGRVFADHVGTTPKEYLRIVRMQRALFLLQQDVTLPFVQVAYECGYSDQSHMIKEF
KLFSGYTPAEYLSVCAPYSDYFSEF
>Mature_185_residues
MITVVFQPYAAKALLHIPVHLFHGKDVAMDEVEDVELSDLAKQVTDTSDNIVCIRLIEQFFLRRLYAFSEYNLKRMSAVF
QEINLQPQINIPQLSEAACLSSKQFGRVFADHVGTTPKEYLRIVRMQRALFLLQQDVTLPFVQVAYECGYSDQSHMIKEF
KLFSGYTPAEYLSVCAPYSDYFSEF

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 21327; Mature: 21327

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVVFQPYAAKALLHIPVHLFHGKDVAMDEVEDVELSDLAKQVTDTSDNIVCIRLIEQF
CEEEEECHHHHHHHHHHHHHEECCCCCCHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHH
FLRRLYAFSEYNLKRMSAVFQEINLQPQINIPQLSEAACLSSKQFGRVFADHVGTTPKEY
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
LRIVRMQRALFLLQQDVTLPFVQVAYECGYSDQSHMIKEFKLFSGYTPAEYLSVCAPYSD
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHH
YFSEF
HHHCC
>Mature Secondary Structure
MITVVFQPYAAKALLHIPVHLFHGKDVAMDEVEDVELSDLAKQVTDTSDNIVCIRLIEQF
CEEEEECHHHHHHHHHHHHHEECCCCCCHHHHHCCCHHHHHHHHHCCCCCEEHHHHHHHH
FLRRLYAFSEYNLKRMSAVFQEINLQPQINIPQLSEAACLSSKQFGRVFADHVGTTPKEY
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
LRIVRMQRALFLLQQDVTLPFVQVAYECGYSDQSHMIKEFKLFSGYTPAEYLSVCAPYSD
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHH
YFSEF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]