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The map label for this gene is lytT [H]

Identifier: 29347204

GI number: 29347204

Start: 2244723

End: 2245451

Strand: Reverse

Name: lytT [H]

Synonym: BT_1794

Alternate gene names: 29347204

Gene position: 2245451-2244723 (Counterclockwise)

Preceding gene: 29347205

Following gene: 29347203

Centisome position: 35.87

GC content: 40.74

Gene sequence:

>729_bases
ATGAAATGTATAGCGATTGATGATGAACCTTTGGCATTGAAGCAATTGACGGATTATATATCCCGTGTTCCTTTTCTATC
TTTAGTCAAGTCCTGTCAGGATGCTTTTGAGGCGATGAAGGTATTGGCAGACGAAGAGATTGACCTGATATTTGTGGATA
TCAATATGCCCGATTTGAATGGACTGGATTTTATCCGCTCTTTAATCAGCCGTCCGATGGTGGTCTTTACTACAGCTTAT
TCTGAATATGCGGTAGACGGTTTCAAACTGGATGCTGTCGATTATTTATTGAAGCCGTTTGAATTTCAGGATTTGCTGAA
AGCGGCGGATAAGGCACGAAAACAGTACGAATACCGAATGTTGGAACAGCAGGGAGAACTGGGAAATAGTTCGCAGATTA
AAGGAGATTCCTTGTTTGTAAAGAGTGACTACAAAGTGGTGCGCATTGATGTGAAAAATATCCGGTATATTGAAGGGATG
AGCGAATACGTGCGTATCTTTATAGAAGGAGAGGATAAACCGGTCATAACCCTTGCCAGCCTTCAAAAAATGGAGGAACG
GCTTCCAACGTATTTTATGCGGGTACATCGTTCTTACATTGTCAATCTGCGTAAGATAACCGAAGTTTCCCGGCTTCGTA
TTATCTTTGATAGAAATACATATATTCCTGTTGGTGATAATTATAAGGAGAGATTTGCGGAGCATATCAGTAAGCTGAGT
TTCTCTTAG

Upstream 100 bases:

>100_bases
TACGCAAACGGTTGCGGTTGTTGTTTGGTAATGATTACACTCTCTCCATTACTGAGGAAGATGATAAATTTGATGTCTTA
CTTATTATACCTTTATTATA

Downstream 100 bases:

>100_bases
AATGTTTTTTATAATTACATTTTGTTACGTCTTATAATTGAATGATATTATGCTTGTTTTGAAAAAAATGAATATTCACA
TTCTCTTTACACATTGGTTT

Product: two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKCIAIDDEPLALKQLTDYISRVPFLSLVKSCQDAFEAMKVLADEEIDLIFVDINMPDLNGLDFIRSLISRPMVVFTTAY
SEYAVDGFKLDAVDYLLKPFEFQDLLKAADKARKQYEYRMLEQQGELGNSSQIKGDSLFVKSDYKVVRIDVKNIRYIEGM
SEYVRIFIEGEDKPVITLASLQKMEERLPTYFMRVHRSYIVNLRKITEVSRLRIIFDRNTYIPVGDNYKERFAEHISKLS
FS

Sequences:

>Translated_242_residues
MKCIAIDDEPLALKQLTDYISRVPFLSLVKSCQDAFEAMKVLADEEIDLIFVDINMPDLNGLDFIRSLISRPMVVFTTAY
SEYAVDGFKLDAVDYLLKPFEFQDLLKAADKARKQYEYRMLEQQGELGNSSQIKGDSLFVKSDYKVVRIDVKNIRYIEGM
SEYVRIFIEGEDKPVITLASLQKMEERLPTYFMRVHRSYIVNLRKITEVSRLRIIFDRNTYIPVGDNYKERFAEHISKLS
FS
>Mature_242_residues
MKCIAIDDEPLALKQLTDYISRVPFLSLVKSCQDAFEAMKVLADEEIDLIFVDINMPDLNGLDFIRSLISRPMVVFTTAY
SEYAVDGFKLDAVDYLLKPFEFQDLLKAADKARKQYEYRMLEQQGELGNSSQIKGDSLFVKSDYKVVRIDVKNIRYIEGM
SEYVRIFIEGEDKPVITLASLQKMEERLPTYFMRVHRSYIVNLRKITEVSRLRIIFDRNTYIPVGDNYKERFAEHISKLS
FS

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=227, Percent_Identity=28.6343612334802, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87082052, Length=244, Percent_Identity=27.4590163934426, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28208; Mature: 28208

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCIAIDDEPLALKQLTDYISRVPFLSLVKSCQDAFEAMKVLADEEIDLIFVDINMPDLN
CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
GLDFIRSLISRPMVVFTTAYSEYAVDGFKLDAVDYLLKPFEFQDLLKAADKARKQYEYRM
CHHHHHHHHHCCEEEEEECHHHHHCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LEQQGELGNSSQIKGDSLFVKSDYKVVRIDVKNIRYIEGMSEYVRIFIEGEDKPVITLAS
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHCHHHHEEEEEECCCCCEEEHHH
LQKMEERLPTYFMRVHRSYIVNLRKITEVSRLRIIFDRNTYIPVGDNYKERFAEHISKLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCHHHHHHHHHHHHC
FS
CC
>Mature Secondary Structure
MKCIAIDDEPLALKQLTDYISRVPFLSLVKSCQDAFEAMKVLADEEIDLIFVDINMPDLN
CEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
GLDFIRSLISRPMVVFTTAYSEYAVDGFKLDAVDYLLKPFEFQDLLKAADKARKQYEYRM
CHHHHHHHHHCCEEEEEECHHHHHCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LEQQGELGNSSQIKGDSLFVKSDYKVVRIDVKNIRYIEGMSEYVRIFIEGEDKPVITLAS
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHCHHHHEEEEEECCCCCEEEHHH
LQKMEERLPTYFMRVHRSYIVNLRKITEVSRLRIIFDRNTYIPVGDNYKERFAEHISKLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCHHHHHHHHHHHHC
FS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]