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The map label for this gene is pal [C]

Identifier: 29347201

GI number: 29347201

Start: 2238501

End: 2239691

Strand: Reverse

Name: pal [C]

Synonym: BT_1791

Alternate gene names: 29347201

Gene position: 2239691-2238501 (Counterclockwise)

Preceding gene: 29347202

Following gene: 29347200

Centisome position: 35.78

GC content: 42.15

Gene sequence:

>1191_bases
ATGAAGGACGTTCCATTGTATTCCCATGGAACGTCCTTTTTAATTTTTGAAATAATAGCGAATATGATGAATAAAAATAT
AATTCTATTGGTATTCCTCTTTATAAGTTCTTCCACTCTCTTTGCTCAACAAACTGGTAGTACGAATGAACGATCTCGTG
TGAAAGAGGAAGGAAAAACTGTATTCAACCCGCATTGGTTTTTGTCAGTGCAGGGTGGGGCTGCTTATACCTTGGGTGAG
GCTGATTTTGGAGACTTGCTCTCACCATCAGTTGCAGTAGCTCTTGGTTATAAGTTTACTCCTTTGTTTGGTCTCCGTGC
TGCAGCGAGTGGCTGGCAGGCTAAAGGAAGCTGGGTAAATCCGACCACCACTTACTCATATAAGTATTTGCAAGGTAGTA
TAGATGCCATGCTCGATCTGAGTAATTTGTGTTGTGGCTTTCATCCCAAACGATTTTTCAATGCTTATCTTTTTCTTGGA
GTAGGCTTGAATGGTGCTTTTGATAATGACGAAGCTGTAGACTTGGATGCAAATGGCTATAAACTGCATCACCTGTGGAC
AGGTAAGAAACTTTTTGTTGCGGGCCGTGGAGGTCTAGGCGCAGACTTCCGGCTGAATAATCATATAGCCATTAACCTGG
AAGTAAATGCCAATATGCTATCTGATAAGTTCAACTCCAAACAAGGTCGTAATGCTGACTGGCAGTTCAATGCTTTGGCT
GGTCTTGCCTTTACATTTGGAAAGAGCTCTAAAAAGACAGCTCCGGTTTATTATGAGCAGGAACAACCGACTGTAACAAC
CGTAGTGGAGCAACCTGCTTCAGCGCCCATAGTGGAACAGCCGCAGCCTAAAGAAGAAAAGATCGCTAAAGAACCTTTGA
AACAAAACGTCTTCTTTGCGTTGAACTCGGCACGTATTCAGACAGATCAACAATCTAAGATTGCTGCTCTAGTCGAATAT
ATGGAGAAGAATCCCGCTGCCAAAGTGAATGTGACAGGTTATGCAGACAAGGAAACCGGTAATCCGGTAATTAATCTGAA
ACTGTCCGAAGCTCGTGCAAAGAATGTTGCCGAAGCATTGAAGGCAAAAGGTATTTCATCTGATCGGATTGCAATTGATT
TTAAAGGCGATACAGTACAACCTTATTCCACTCCAAAGGAAAATCGTGTCAGTATCTGTATTGCAGAATAA

Upstream 100 bases:

>100_bases
TTTCCCTTAGTTACTACTTTTATGTAACATTCCCCACTAATTAAGGAGATGGTTAAGAATACAGAAGTCTGGACTTGTGA
AAGTATAGCTTCTTATAATA

Downstream 100 bases:

>100_bases
TATTTCCCCGTTCTTATGTGAGATGCAGTTTTTCCCTGTTAGCCTCTTCATAAGAGGAAATCTCACAGTAAGAATATATG
GAAGCTGATGCTTGTGAAAG

Product: outer membrane protein

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKDVPLYSHGTSFLIFEIIANMMNKNIILLVFLFISSSTLFAQQTGSTNERSRVKEEGKTVFNPHWFLSVQGGAAYTLGE
ADFGDLLSPSVAVALGYKFTPLFGLRAAASGWQAKGSWVNPTTTYSYKYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLG
VGLNGAFDNDEAVDLDANGYKLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLSDKFNSKQGRNADWQFNALA
GLAFTFGKSSKKTAPVYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIAKEPLKQNVFFALNSARIQTDQQSKIAALVEY
MEKNPAAKVNVTGYADKETGNPVINLKLSEARAKNVAEALKAKGISSDRIAIDFKGDTVQPYSTPKENRVSICIAE

Sequences:

>Translated_396_residues
MKDVPLYSHGTSFLIFEIIANMMNKNIILLVFLFISSSTLFAQQTGSTNERSRVKEEGKTVFNPHWFLSVQGGAAYTLGE
ADFGDLLSPSVAVALGYKFTPLFGLRAAASGWQAKGSWVNPTTTYSYKYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLG
VGLNGAFDNDEAVDLDANGYKLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLSDKFNSKQGRNADWQFNALA
GLAFTFGKSSKKTAPVYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIAKEPLKQNVFFALNSARIQTDQQSKIAALVEY
MEKNPAAKVNVTGYADKETGNPVINLKLSEARAKNVAEALKAKGISSDRIAIDFKGDTVQPYSTPKENRVSICIAE
>Mature_396_residues
MKDVPLYSHGTSFLIFEIIANMMNKNIILLVFLFISSSTLFAQQTGSTNERSRVKEEGKTVFNPHWFLSVQGGAAYTLGE
ADFGDLLSPSVAVALGYKFTPLFGLRAAASGWQAKGSWVNPTTTYSYKYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLG
VGLNGAFDNDEAVDLDANGYKLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLSDKFNSKQGRNADWQFNALA
GLAFTFGKSSKKTAPVYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIAKEPLKQNVFFALNSARIQTDQQSKIAALVEY
MEKNPAAKVNVTGYADKETGNPVINLKLSEARAKNVAEALKAKGISSDRIAIDFKGDTVQPYSTPKENRVSICIAE

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 43480; Mature: 43480

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVPLYSHGTSFLIFEIIANMMNKNIILLVFLFISSSTLFAQQTGSTNERSRVKEEGKT
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHCCCEEEEECCCCCCHHHHHHHCCCE
VFNPHWFLSVQGGAAYTLGEADFGDLLSPSVAVALGYKFTPLFGLRAAASGWQAKGSWVN
EECCEEEEEECCCCEEEECCCCCCHHCCCCEEEEECCEECCHHHHHHHCCCCCCCCCCCC
PTTTYSYKYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLGVGLNGAFDNDEAVDLDANGY
CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHCEEEEEEECCCCCCCCCCEEEECCCCE
KLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLSDKFNSKQGRNADWQFNALA
EEEEEECCCEEEEEECCCCCCCEEECCEEEEEEEECCHHHHHCCCCCCCCCCCEEEEHHE
GLAFTFGKSSKKTAPVYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIAKEPLKQNVFFA
EEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
LNSARIQTDQQSKIAALVEYMEKNPAAKVNVTGYADKETGNPVINLKLSEARAKNVAEAL
EECCEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHH
KAKGISSDRIAIDFKGDTVQPYSTPKENRVSICIAE
HHCCCCCCEEEEEECCCEECCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKDVPLYSHGTSFLIFEIIANMMNKNIILLVFLFISSSTLFAQQTGSTNERSRVKEEGKT
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHCCCEEEEECCCCCCHHHHHHHCCCE
VFNPHWFLSVQGGAAYTLGEADFGDLLSPSVAVALGYKFTPLFGLRAAASGWQAKGSWVN
EECCEEEEEECCCCEEEECCCCCCHHCCCCEEEEECCEECCHHHHHHHCCCCCCCCCCCC
PTTTYSYKYLQGSIDAMLDLSNLCCGFHPKRFFNAYLFLGVGLNGAFDNDEAVDLDANGY
CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHCEEEEEEECCCCCCCCCCEEEECCCCE
KLHHLWTGKKLFVAGRGGLGADFRLNNHIAINLEVNANMLSDKFNSKQGRNADWQFNALA
EEEEEECCCEEEEEECCCCCCCEEECCEEEEEEEECCHHHHHCCCCCCCCCCCEEEEHHE
GLAFTFGKSSKKTAPVYYEQEQPTVTTVVEQPASAPIVEQPQPKEEKIAKEPLKQNVFFA
EEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
LNSARIQTDQQSKIAALVEYMEKNPAAKVNVTGYADKETGNPVINLKLSEARAKNVAEAL
EECCEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHH
KAKGISSDRIAIDFKGDTVQPYSTPKENRVSICIAE
HHCCCCCCEEEEEECCCEECCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]