Click here to switch to the map view.

The map label for this gene is spsF [H]

Identifier: 29347125

GI number: 29347125

Start: 2111511

End: 2112260

Strand: Reverse

Name: spsF [H]

Synonym: BT_1715

Alternate gene names: 29347125

Gene position: 2112260-2111511 (Counterclockwise)

Preceding gene: 29347126

Following gene: 29347124

Centisome position: 33.74

GC content: 32.67

Gene sequence:

>750_bases
ATGAATTATGCATTTGTGGTGCAGGCACGTTTAGGTTCTACACGTTTGCCTGGAAAAATATTGAAACCTTTCTATGGTAA
TCAATCGATTCTTGACTTAATGGTTCATAAGCTTTCTGCTATATCGAATATTCCAGTAATTATTGCTACAACAAATTCTG
TTATCAATGAACCTATTGAAAAGAAGGCACTTGCATTAGGGGTAAAGTGCTTCAGAGGTGAGGAGAATGATGTTTTAAAA
CGATTCATTGATGTTGCTGAATATTTTGATATACAGGGTATATTCCGAATATGTTCTGATAATCCATTTTTAGATGTACA
TGCGGCAAGGCAATTGGTCGAAATAGCAATGAAATCTTGTAACGATTATATAAGTTTTGATATTGATGGTACTCCATCAA
TTAAAACTCATTTCGGTTTTTGGGGAGAATTTGTAACGCTTGATGCGCTGAAGCGAGTTATAGGATTTACTGATGATTTA
TTGTATCGTGAACATGTTACTAATTATATATATAGTCATCCTGAACTTTTTAATATTCAATGGATTTCAGGATCTCCAGT
CGTGTCAAAACATCATAATATTCGACTCACGATTGATACGTTAGAAGATTTTTCTGTAGCACAGAGAATATATAGGGATT
TACAAGAAAAAAGAGTGGAAATATCGATAGAAGTGATTGTAGACTATGTTCGAAGACATGCAGAATACATTCAACTGATG
AAACAACAAATAAAAAAAAATTCTAAATAA

Upstream 100 bases:

>100_bases
AACATCGACGTCATATTTCTTTATTGATGAATCAATTTCAAGATGATAATTCAACAAAGAGAATATGTGACATATTTTTA
AATGAAATATAATAAATAAA

Downstream 100 bases:

>100_bases
TGAAGAATACTTATATTATTGGTGAAATAGGGCAGAATCATAATGGTTCTGTTGACTTGGCTAAGTTGATTATTGAATTA
ATCTCACGACCTGTACATGA

Product: putative polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPVIIATTNSVINEPIEKKALALGVKCFRGEENDVLK
RFIDVAEYFDIQGIFRICSDNPFLDVHAARQLVEIAMKSCNDYISFDIDGTPSIKTHFGFWGEFVTLDALKRVIGFTDDL
LYREHVTNYIYSHPELFNIQWISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIVDYVRRHAEYIQLM
KQQIKKNSK

Sequences:

>Translated_249_residues
MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPVIIATTNSVINEPIEKKALALGVKCFRGEENDVLK
RFIDVAEYFDIQGIFRICSDNPFLDVHAARQLVEIAMKSCNDYISFDIDGTPSIKTHFGFWGEFVTLDALKRVIGFTDDL
LYREHVTNYIYSHPELFNIQWISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIVDYVRRHAEYIQLM
KQQIKKNSK
>Mature_249_residues
MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPVIIATTNSVINEPIEKKALALGVKCFRGEENDVLK
RFIDVAEYFDIQGIFRICSDNPFLDVHAARQLVEIAMKSCNDYISFDIDGTPSIKTHFGFWGEFVTLDALKRVIGFTDDL
LYREHVTNYIYSHPELFNIQWISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIVDYVRRHAEYIQLM
KQQIKKNSK

Specific function: Unknown

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CMP-NeuNAc synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: NA

Molecular weight: Translated: 28698; Mature: 28698

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPVIIATTNSVINEPIE
CCEEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCHHH
KKALALGVKCFRGEENDVLKRFIDVAEYFDIQGIFRICSDNPFLDVHAARQLVEIAMKSC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCC
NDYISFDIDGTPSIKTHFGFWGEFVTLDALKRVIGFTDDLLYREHVTNYIYSHPELFNIQ
CCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
WISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIVDYVRRHAEYIQLM
EECCCCCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQQIKKNSK
HHHHHCCCC
>Mature Secondary Structure
MNYAFVVQARLGSTRLPGKILKPFYGNQSILDLMVHKLSAISNIPVIIATTNSVINEPIE
CCEEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCHHH
KKALALGVKCFRGEENDVLKRFIDVAEYFDIQGIFRICSDNPFLDVHAARQLVEIAMKSC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCC
NDYISFDIDGTPSIKTHFGFWGEFVTLDALKRVIGFTDDLLYREHVTNYIYSHPELFNIQ
CCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
WISGSPVVSKHHNIRLTIDTLEDFSVAQRIYRDLQEKRVEISIEVIVDYVRRHAEYIQLM
EECCCCCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQQIKKNSK
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]